VTR

15 main matches found (34 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.71

VTR = 0.02

Average AVD = 0.59 Å

Parameters

Chains(7KN6.pdb ): A versus C

Chains(7KN6_africa_mut.pdb ) A versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN6 721 19 2 16 0 0 0 37
B7KN6_africa_mut 721 22 2 17 0 0 1 42

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-C A-C A372 W47 A372 W47 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-C A-C A372 E46 A372 E46 Hydrophobic Hydrophobic 0.32 View
A-C A-C Q506 Q39 Q506 Q39 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-C A-C K378 E95 K378 E95 Attractive Attractive 1.03 View
A-C A-C N437 L45 N437 L45 Hydrophobic Hydrophobic 0.15 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 0.7 View
A-C A-C V503 Y91 V503 Y91 Hydrophobic Hydrophobic 0.46 View
A-C A-C F374 W47 F374 W47 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-C A-C A372 Q60 A372 Q60 Hydrophobic Hydrophobic 0.27 View
A-C A-C Q414 S97 Q414 S97 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 0.63 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 0.66 View
A-C A-C Y380 G99 Y380 G99 Hydrogen Bonds Hydrogen Bonds 1.22 View
A-C A-C V503 L45 V503 L45 Hydrophobic Hydrophobic 0.47 View
A-C A-C N437 L45 N437 L45 Hydrophobic Hydrophobic 0.21 View
A-C A-C S371 W47 S371 W47 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-C A-C K378 S97 K378 L98 Hydrogen Bonds Hydrogen Bonds 1.99 View
A-C A-C Q506 Q39 Q506 Q39 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 0.51 View
A-C A-C A372 E46 A372 E46 Hydrophobic Hydrophobic 0.31 View
A-C A-C Y369 Y52 Y369 Y52 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-C A-C V503 Y91 V503 Y91 Hydrophobic Hydrophobic 0.45 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 0.57 View
A-C A-C R408 S102 R408 S102 Hydrogen Bonds Hydrogen Bonds 1.04 View
A-C A-C Y508 W103 Y508 W103 Hydrophobic Hydrophobic 0.65 View
A-C A-C Y369 E58 Y369 E58 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-C A-C A372 W47 A372 W47 Hydrogen Bonds Hydrogen Bonds 0.5 View
A-C A-C K378 E95 K378 E95 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.26 View
A-C A-C V503 L45 V503 L45 Hydrophobic Hydrophobic 0.72 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 0.67 View
A-C A-C V503 W103 V503 W103 Hydrophobic Hydrophobic 1.48 View
A-C A-C V503 Y91 V503 Y91 Hydrophobic Hydrophobic 0.43 View
A-C A-C V503 Y91 V503 Y91 Hydrophobic Hydrophobic 0.43 View
A-C A-C Y369 E58 Y369 E58 Hydrogen Bonds Hydrogen Bonds 0.38 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN6 | 7KN6_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KN6 A-C K378 G99 Hydrogen Bonds 2.79 View
7KN6 A-C R408 G101 Hydrogen Bonds 2.48 View
7KN6_africa_mut A-C Y380 G99 Hydrogen Bonds 2.58 View
7KN6_africa_mut A-C Y380 G100 Hydrogen Bonds 3.52 View
7KN6_africa_mut A-C V503 L45 Hydrophobic 4.33 View
7KN6_africa_mut A-C V503 Y91 Hydrophobic 4.20 View
7KN6_africa_mut A-C V503 W103 Hydrophobic 4.42 View
7KN6_africa_mut A-C Y508 W103 Aromatic Stacking 5.71 View
7KN6_africa_mut A-C Y508 W103 Hydrogen Bonds 3.71 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph