VTR

15 main matches found (28 matches in total )

Execution time: 6.0 seconds

Match RMSD = 0.9

VTR = 0.13

Average AVD = 0.79 Å

Parameters

Chains(7KN5.pdb ): B versus D

Chains(7KN5_africa_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN5 834 26 7 14 0 0 2 49
B7KN5_africa_mut 834 48 4 12 0 1 3 68

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-D B-D Q498 L29 Q498 L29 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-D B-D F490 T98 F490 Y100 Hydrophobic Hydrophobic 0.88 View
B-D B-D Y449 Y31 Y449 Y31 Hydrophobic Hydrophobic 0.66 View
B-D B-D F486 Y58 F486 Y58 Hydrophobic Hydrophobic 0.21 View
B-D B-D R403 D101 R403 D101 Attractive Attractive 1.39 View
B-D B-D Y449 Y31 Y449 Y31 Hydrogen Bonds Hydrogen Bonds 1.2 View
B-D B-D K444 D30 K444 D30 Attractive Attractive 0.33 View
B-D B-D F486 Y58 F486 Y58 Hydrophobic Hydrophobic 0.16 View
B-D B-D Q498 T28 Q498 T28 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-D B-D S494 Y99 S494 T98 Hydrogen Bonds Hydrogen Bonds 1.74 View
B-D B-D L452 T98 L452 Y100 Hydrophobic Hydrophobic 0.8 View
B-D B-D R403 D101 R403 D101 Attractive Attractive 0.74 View
B-D B-D E484 R56 K484 R56 Attractive Repulsive 1.43 View
B-D B-D Q498 T28 Q498 T28 Hydrogen Bonds Hydrogen Bonds 0.45 View
B-D B-D F490 T98 F490 Y100 Hydrophobic Hydrophobic 0.93 View
B-D B-D Y449 Y31 Y449 Y31 Hydrophobic Hydrophobic 0.87 View
B-D B-D Y449 Y31 Y449 Y31 Hydrophobic Hydrophobic 0.64 View
B-D B-D Y449 Y31 Y449 Y31 Aromatic Stacking Aromatic Stacking 0.57 View
B-D B-D Y449 V96 Y449 V96 Hydrophobic Hydrophobic 1.0 View
B-D B-D Q498 L29 Q498 L29 Hydrophobic Hydrophobic 0.47 View
B-D B-D Y449 V96 Y449 V96 Hydrophobic Hydrophobic 1.07 View
B-D B-D G446 D30 G446 D30 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-D B-D Y449 Y99 Y449 Y99 Hydrophobic Hydrophobic 0.95 View
B-D B-D Y449 D30 Y449 D30 Hydrogen Bonds Hydrogen Bonds 0.75 View
B-D B-D Y449 Y31 Y449 Y31 Hydrophobic Hydrophobic 0.56 View
B-D B-D K444 D30 K444 D30 Attractive Attractive 0.29 View
B-D B-D Q493 T98 Q493 Y100 Hydrogen Bonds Hydrophobic 1.93 View
B-D B-D Y449 Y31 Y449 Y31 Hydrogen Bonds Hydrogen Bonds 0.89 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN5 | 7KN5_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KN5 B-D R403 D101 Attractive 5.04 View
7KN5 B-D L452 Y100 Hydrophobic 4.42 View
7KN5 B-D T470 Y100 Hydrophobic 4.26 View
7KN5 B-D T470 Y100 Hydrophobic 3.82 View
7KN5 B-D E484 R56 Attractive 4.98 View
7KN5 B-D F490 Y100 Aromatic Stacking 5.55 View
7KN5 B-D F490 Y100 Hydrophobic 4.32 View
7KN5 B-D F490 Y100 Hydrophobic 3.86 View
7KN5 B-D F490 Y100 Hydrophobic 4.17 View
7KN5 B-D F490 Y100 Hydrophobic 4.46 View
7KN5 B-D F490 Y100 Hydrophobic 3.72 View
7KN5 B-D F490 Y100 Hydrophobic 3.69 View
7KN5 B-D F490 Y100 Hydrophobic 3.56 View
7KN5 B-D F490 Y100 Hydrophobic 4.30 View
7KN5 B-D L492 T98 Hydrogen Bonds 3.59 View
7KN5 B-D L492 Y100 Hydrophobic 4.11 View
7KN5 B-D L492 Y100 Hydrophobic 4.07 View
7KN5 B-D Q493 V96 Hydrogen Bonds 2.90 View
7KN5 B-D Q493 G97 Hydrogen Bonds 3.75 View
7KN5 B-D Q493 T98 Hydrogen Bonds 3.36 View
7KN5 B-D S494 T98 Hydrogen Bonds 3.07 View
7KN5_africa_mut B-D Y449 V96 Hydrophobic 3.85 View
7KN5_africa_mut B-D Y449 V96 Hydrophobic 4.38 View
7KN5_africa_mut B-D Y449 V96 Hydrophobic 2.97 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.64 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.06 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.26 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.27 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.62 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.71 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.52 View
7KN5_africa_mut B-D Y449 Y99 Aromatic Stacking 4.86 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 4.21 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.46 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 4.06 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 2.92 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.07 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 4.13 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 2.94 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.89 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.78 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 4.20 View
7KN5_africa_mut B-D Y449 Y99 Hydrophobic 3.92 View
7KN5_africa_mut B-D L452 Y99 Hydrophobic 4.46 View
7KN5_africa_mut B-D L452 Y100 Hydrophobic 4.27 View
7KN5_africa_mut B-D F490 Y100 Hydrophobic 4.16 View
7KN5_africa_mut B-D F490 Y100 Aromatic Stacking 5.80 View
7KN5_africa_mut B-D F490 Y100 Hydrophobic 4.29 View
7KN5_africa_mut B-D F490 Y100 Hydrophobic 3.62 View
7KN5_africa_mut B-D F490 Y100 Hydrophobic 4.44 View
7KN5_africa_mut B-D L492 Y100 Hydrophobic 4.25 View
7KN5_africa_mut B-D L492 Y100 Hydrogen Bonds 3.76 View
7KN5_africa_mut B-D Q493 Y100 Hydrophobic 3.66 View
7KN5_africa_mut B-D Q493 Y100 Hydrophobic 3.96 View
7KN5_africa_mut B-D Q493 Y100 Hydrophobic 4.26 View
7KN5_africa_mut B-D Q493 Y100 Hydrophobic 2.95 View
7KN5_africa_mut B-D Q493 Y100 Hydrophobic 3.76 View
7KN5_africa_mut B-D Q493 Y100 Hydrophobic 4.45 View
7KN5_africa_mut B-D Q493 Y100 Hydrogen Bonds 3.21 View
7KN5_africa_mut B-D S494 Y99 Hydrogen Bonds 3.77 View
7KN5_africa_mut B-D S494 Y100 Hydrogen Bonds 2.80 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph