VTR

17 main matches found (28 matches in total )

Execution time: 5.0 seconds

Match RMSD = 1.02

VTR = 0.06

Average AVD = 0.95 Å

Parameters

Chains(7KN5.pdb ): A versus E

Chains(7KN5_africa_mut.pdb ) A versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN5 834 13 2 15 0 0 1 31
B7KN5_africa_mut 834 16 2 21 0 0 1 40

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 1.12 View
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.83 View
A-E A-E P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.96 View
A-E A-E F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.83 View
A-E A-E S371 S98 S371 S98 Hydrogen Bonds Hydrogen Bonds 0.9 View
A-E A-E Y369 Y99 Y369 Y99 Hydrogen Bonds Hydrogen Bonds 1.51 View
A-E A-E S371 S98 S371 S98 Hydrogen Bonds Hydrogen Bonds 1.28 View
A-E A-E F377 S96 F377 S96 Hydrogen Bonds Hydrogen Bonds 0.94 View
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.67 View
A-E A-E F377 S96 F377 S96 Hydrogen Bonds Hydrogen Bonds 0.65 View
A-E A-E P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.99 View
A-E A-E Y369 Y99 Y369 Y99 Aromatic Stacking Aromatic Stacking 1.31 View
A-E A-E T385 Y31 T385 Y31 Hydrophobic Hydrophobic 0.89 View
A-E A-E F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.9 View
A-E A-E K378 E101 K378 E101 Attractive Attractive Hydrogen Bonds 1.81 View
A-E A-E S375 Q95 S375 Q95 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 1.14 View
A-E A-E K378 S96 K378 S96 Hydrogen Bonds Hydrogen Bonds 0.65 View
A-E A-E S383 Y31 S383 Y31 Hydrogen Bonds Hydrogen Bonds 0.5 View
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.97 View
A-E A-E S373 S98 S373 S98 Hydrogen Bonds Hydrogen Bonds 0.94 View
A-E A-E S371 Y99 S371 Y99 Hydrogen Bonds Hydrogen Bonds 1.65 View
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.75 View
A-E A-E P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.42 View
A-E A-E T376 Q95 T376 Q95 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-E A-E Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.65 View
A-E A-E F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.53 View
A-E A-E S371 Y100 S371 Y100 Hydrogen Bonds Hydrogen Bonds 1.58 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN5 | 7KN5_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KN5 A-E N370 Y100 Hydrophobic 3.99 View
7KN5 A-E A372 Y100 Hydrophobic 3.95 View
7KN5 A-E K378 E101 Attractive 5.63 View
7KN5_africa_mut A-E Y369 S98 Hydrogen Bonds 2.99 View
7KN5_africa_mut A-E Y369 Y99 Hydrophobic 4.41 View
7KN5_africa_mut A-E A372 S98 Hydrogen Bonds 3.78 View
7KN5_africa_mut A-E A372 Y100 Hydrogen Bonds 3.32 View
7KN5_africa_mut A-E A372 Y100 Hydrophobic 4.27 View
7KN5_africa_mut A-E A372 Y100 Hydrophobic 3.56 View
7KN5_africa_mut A-E F377 G97 Hydrogen Bonds 3.89 View
7KN5_africa_mut A-E K378 E101 Attractive, Hydrogen Bonds 4.50 View
7KN5_africa_mut A-E P384 Y31 Hydrophobic 3.18 View
7KN5_africa_mut A-E P384 Y31 Hydrophobic 3.09 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph