VTR

17 main matches found (26 matches in total )

Execution time: 54.0 seconds

Match RMSD = 0.37

VTR = 0.01

Average AVD = 0.35 Å

Parameters

Chains(7KML.pdb ): B versus M

Chains(7KML_africa_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KML 4413 9 10 9 0 3 2 33
B7KML_africa_mut 4404 11 8 9 0 3 2 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.39 View
B-M B-M Y421 R80 Y421 R80 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-M B-M E406 D66 E406 D66 Repulsive Repulsive 0.39 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.27 View
B-M B-M A475 T109 A475 T109 Hydrogen Bonds Hydrogen Bonds 0.29 View
B-M B-M E406 D66 E406 D66 Repulsive Repulsive 0.58 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.26 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.31 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.29 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.2 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.38 View
B-M B-M Y473 H108 Y473 H108 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.33 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.58 View
B-M B-M D405 D66 D405 D66 Repulsive Repulsive 0.25 View
B-M B-M N487 Y114 N487 Y114 Hydrogen Bonds Hydrogen Bonds 0.19 View
B-M B-M F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.25 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.37 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.39 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.26 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.53 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.35 View
B-M B-M Y473 H108 Y473 H108 Aromatic Stacking Aromatic Stacking 0.24 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.34 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.44 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.41 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KML | 7KML_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KML B-M K417 S56 Hydrogen Bonds 3.06 View
7KML B-M K417 D66 Attractive 4.23 View
7KML B-M K417 D66 Attractive, Hydrogen Bonds 3.53 View
7KML_africa_mut B-M N417 S37 Hydrogen Bonds 2.87 View
7KML_africa_mut B-M F486 Y114 Hydrophobic 4.45 View
7KML_africa_mut B-M F486 Y114 Hydrophobic 4.36 View
7KML_africa_mut B-M Y489 H108 Hydrogen Bonds 3.70 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph