VTR

18 main matches found (26 matches in total )

Execution time: 51.0 seconds

Match RMSD = 0.47

VTR = 0.02

Average AVD = 0.38 Å

Parameters

Chains(7KMK.pdb ): B versus M

Chains(7KMK_africa_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KMK 3952 8 10 12 0 2 2 34
B7KMK_africa_mut 3943 10 8 12 0 2 3 35

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M Y505 S69 Y505 S69 Hydrogen Bonds Hydrogen Bonds 1.15 View
B-M B-M A475 T109 A475 T109 Hydrophobic Hydrophobic 0.41 View
B-M B-M L455 S36 L455 S36 Hydrogen Bonds Hydrogen Bonds 0.36 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.29 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.11 View
B-M B-M Y505 Y55 Y505 Y55 Hydrogen Bonds Hydrogen Bonds 1.04 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.29 View
B-M B-M E406 D66 E406 D66 Repulsive Repulsive 0.32 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.33 View
B-M B-M Y505 L67 Y505 L67 Hydrogen Bonds Hydrogen Bonds 1.06 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.28 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.17 View
B-M B-M N487 Y114 N487 Y114 Hydrogen Bonds Hydrogen Bonds 0.46 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.35 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.33 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.27 View
B-M B-M E406 D66 E406 D66 Repulsive Repulsive 0.44 View
B-M B-M A475 H108 A475 H108 Hydrogen Bonds Hydrogen Bonds 0.36 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.24 View
B-M B-M F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.24 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.21 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.22 View
B-M B-M F456 H108 F456 H108 Aromatic Stacking Aromatic Stacking 0.38 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.13 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.25 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.32 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KMK | 7KMK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KMK B-M K417 D66 Attractive, Hydrogen Bonds 3.73 View
7KMK B-M K417 D66 Attractive, Hydrogen Bonds 2.66 View
7KMK_africa_mut B-M N417 S37 Hydrogen Bonds 3.37 View
7KMK_africa_mut B-M Y473 H108 Aromatic Stacking 5.93 View
7KMK_africa_mut B-M F486 Y114 Hydrophobic 4.43 View
7KMK_africa_mut B-M F486 Y114 Hydrophobic 4.45 View
7KMK_africa_mut B-M Y501 S69 Hydrogen Bonds 3.07 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph