VTR

6 main matches found (47 matches in total )

Execution time: 56.0 seconds

Match RMSD = 0.47

VTR = 0.01

Average AVD = 0.43 Å

Parameters

Chains(7KMK.pdb ): B versus I

Chains(7KMK_africa_mut.pdb ) B versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KMK 3952 41 0 6 0 0 2 49
B7KMK_africa_mut 3943 47 0 4 0 0 3 54

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.2 View
B-I B-I Q493 Y108 Q493 Y108 Hydrogen Bonds Hydrogen Bonds 0.75 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.76 View
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.34 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.57 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.4 View
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.32 View
B-I B-I F486 Y110 F486 Y110 Aromatic Stacking Aromatic Stacking 0.38 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.34 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.73 View
B-I B-I L455 F113 L455 F113 Hydrophobic Hydrophobic 0.32 View
B-I B-I G485 Y109 G485 Y109 Hydrogen Bonds Hydrogen Bonds 0.86 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.43 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.45 View
B-I B-I Q493 Y108 Q493 Y108 Hydrophobic Hydrophobic 0.74 View
B-I B-I Y489 F113 Y489 F113 Hydrophobic Hydrophobic 0.28 View
B-I B-I Y489 Y109 Y489 Y109 Aromatic Stacking Aromatic Stacking 0.59 View
B-I B-I F486 A64 F486 A64 Hydrophobic Hydrophobic 0.41 View
B-I B-I F486 Y57 F486 Y57 Hydrophobic Hydrophobic 0.13 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.53 View
B-I B-I C488 Y109 C488 Y109 Hydrogen Bonds Hydrogen Bonds 0.99 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.32 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.45 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.39 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.46 View
B-I B-I F486 A64 F486 A64 Hydrophobic Hydrophobic 0.39 View
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.17 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.55 View
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.27 View
B-I B-I L455 F113 L455 F113 Hydrophobic Hydrophobic 0.32 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.34 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.43 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.58 View
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.22 View
B-I B-I L455 F113 L455 F113 Hydrophobic Hydrophobic 0.31 View
B-I B-I F486 A66 F486 A66 Hydrophobic Hydrophobic 0.27 View
B-I B-I Y489 F113 Y489 F113 Hydrophobic Hydrophobic 0.28 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.39 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.27 View
B-I B-I Q493 Y108 Q493 Y108 Hydrogen Bonds Hydrogen Bonds 0.64 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.56 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.54 View
B-I B-I Q493 F113 Q493 F113 Hydrophobic Hydrophobic 0.19 View
B-I B-I Q493 F113 Q493 F113 Hydrophobic Hydrophobic 0.2 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.29 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.39 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.54 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KMK | 7KMK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KMK B-I E484 Y109 Hydrogen Bonds 3.76 View
7KMK B-I F490 Y109 Hydrogen Bonds 3.88 View
7KMK_africa_mut B-I K484 Y109 Hydrophobic 4.45 View
7KMK_africa_mut B-I K484 Y109 Hydrophobic 4.35 View
7KMK_africa_mut B-I F486 Y57 Hydrophobic 4.40 View
7KMK_africa_mut B-I F486 Y110 Hydrophobic 4.44 View
7KMK_africa_mut B-I F486 Y110 Hydrophobic 4.43 View
7KMK_africa_mut B-I F486 Y110 Hydrophobic 4.23 View
7KMK_africa_mut B-I Y489 F113 Aromatic Stacking 5.88 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph