VTR

16 main matches found (33 matches in total )

Execution time: 13.0 seconds

Match RMSD = 0.39

VTR = 0.01

Average AVD = 0.33 Å

Parameters

Chains(7KMI.pdb ): C versus A

Chains(7KMI_africa_mut.pdb ) C versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KMI 627 17 1 15 0 0 1 34
B7KMI_africa_mut 627 18 0 17 0 0 1 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-C A-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.38 View
A-C A-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.2 View
A-C A-C S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-C A-C Y105 F486 Y105 F486 Hydrophobic Hydrophobic 0.28 View
A-C A-C Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.58 View
A-C A-C Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.21 View
A-C A-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.21 View
A-C A-C R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.14 View
A-C A-C G26 N487 G26 N487 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-C A-C T28 A475 T28 A475 Hydrogen Bonds Hydrogen Bonds 0.66 View
A-C A-C Y33 F456 Y33 F456 Aromatic Stacking Aromatic Stacking 0.21 View
A-C A-C G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-C A-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.21 View
A-C A-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.22 View
A-C A-C N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-C A-C Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-C A-C A100 L455 A100 L455 Hydrophobic Hydrophobic 0.51 View
A-C A-C T28 A475 T28 A475 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-C A-C R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-C A-C R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-C A-C Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.19 View
A-C A-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.22 View
A-C A-C G54 N460 G54 N460 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-C A-C R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.12 View
A-C A-C V99 F456 V99 F456 Hydrophobic Hydrophobic 0.22 View
A-C A-C S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.2 View
A-C A-C G54 K458 G54 K458 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-C A-C V99 Y489 V99 Y489 Hydrophobic Hydrophobic 0.27 View
A-C A-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.33 View
A-C A-C S31 Y473 S31 Y473 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-C A-C Y52 K417 Y52 N417 Hydrophobic Hydrophobic 1.17 View
A-C A-C Y105 F486 Y105 F486 Hydrophobic Hydrophobic 0.17 View
A-C A-C V99 Y489 V99 Y489 Hydrophobic Hydrophobic 0.21 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KMI | 7KMI_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KMI A-C E98 K417 Attractive 5.01 View
7KMI_africa_mut A-C S31 A475 Hydrogen Bonds 3.69 View
7KMI_africa_mut A-C Y33 N417 Hydrogen Bonds 2.73 View
7KMI_africa_mut A-C Y52 Y421 Hydrophobic 4.41 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph