VTR

10 main matches found (46 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.6

VTR = 0.03

Average AVD = 0.49 Å

Parameters

Chains(7KMG.pdb ): F versus D

Chains(7KMG_africa_mut.pdb ) F versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KMG 1255 37 8 12 0 0 1 58
B7KMG_africa_mut 1255 51 0 11 0 0 1 63

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-F D-F W47 V483 W47 V483 Hydrophobic Hydrophobic 0.2 View
D-F D-F I52 F490 I52 F490 Hydrophobic Hydrophobic 0.39 View
D-F D-F L55 L452 L55 L452 Hydrophobic Hydrophobic 1.01 View
D-F D-F A103 Q493 A103 Q493 Hydrogen Bonds Hydrogen Bonds 0.29 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.35 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.36 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.36 View
D-F D-F N31 Y449 N31 Y449 Hydrophobic Hydrophobic 0.43 View
D-F D-F L55 F490 L55 F490 Hydrophobic Hydrophobic 0.67 View
D-F D-F L55 L492 L55 L492 Hydrophobic Hydrophobic 0.86 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.31 View
D-F D-F Y110 G485 Y110 G485 Hydrogen Bonds Hydrogen Bonds 0.51 View
D-F D-F I52 F490 I52 F490 Hydrophobic Hydrophobic 0.42 View
D-F D-F Y110 E484 Y110 K484 Hydrophobic Hydrophobic 0.72 View
D-F D-F N31 Y449 N31 Y449 Hydrophobic Hydrophobic 0.6 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.37 View
D-F D-F I57 T470 I57 T470 Hydrophobic Hydrophobic 0.65 View
D-F D-F E102 S494 E102 S494 Hydrogen Bonds Hydrogen Bonds 0.14 View
D-F D-F R50 G482 R50 G482 Hydrogen Bonds Hydrogen Bonds 0.16 View
D-F D-F I57 F490 I57 F490 Hydrophobic Hydrophobic 0.44 View
D-F D-F E102 S494 E102 S494 Hydrogen Bonds Hydrogen Bonds 0.13 View
D-F D-F Y110 C488 Y110 C488 Hydrogen Bonds Hydrogen Bonds 0.92 View
D-F D-F Y101 F490 Y101 F490 Aromatic Stacking Aromatic Stacking 0.18 View
D-F D-F L55 L452 L55 L452 Hydrophobic Hydrophobic 0.87 View
D-F D-F W47 V483 W47 V483 Hydrophobic Hydrophobic 0.17 View
D-F D-F I52 F490 I52 F490 Hydrophobic Hydrophobic 0.32 View
D-F D-F A103 L455 A103 L455 Hydrophobic Hydrophobic 0.29 View
D-F D-F Y110 E484 Y110 K484 Hydrophobic Hydrophobic 1.44 View
D-F D-F I57 F490 I57 F490 Hydrophobic Hydrophobic 0.46 View
D-F D-F I52 F490 I52 F490 Hydrophobic Hydrophobic 0.24 View
D-F D-F N59 G482 N59 G482 Hydrogen Bonds Hydrogen Bonds 0.33 View
D-F D-F E102 S494 E102 S494 Hydrogen Bonds Hydrogen Bonds 0.52 View
D-F D-F I52 F490 I52 F490 Hydrophobic Hydrophobic 0.4 View
D-F D-F A103 F456 A103 F456 Hydrophobic Hydrophobic 0.31 View
D-F D-F L55 L452 L55 L452 Hydrophobic Hydrophobic 1.25 View
D-F D-F L55 F490 L55 F490 Hydrophobic Hydrophobic 0.68 View
D-F D-F Y110 E484 Y110 K484 Hydrophobic Hydrophobic 1.91 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.29 View
D-F D-F E102 Q493 E102 Q493 Hydrophobic Hydrophobic 0.2 View
D-F D-F N59 V483 N59 V483 Hydrophobic Hydrophobic 0.27 View
D-F D-F N31 Y449 N31 Y449 Hydrophobic Hydrophobic 0.57 View
D-F D-F E102 Q493 E102 Q493 Hydrophobic Hydrophobic 0.17 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.34 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.33 View
D-F D-F Y101 F490 Y101 F490 Hydrophobic Hydrophobic 0.3 View
D-F D-F R104 Q493 R104 Q493 Hydrogen Bonds Hydrogen Bonds 0.3 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KMG | 7KMG_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KMG D-F R50 E484 Attractive, Hydrogen Bonds 3.19 View
7KMG D-F R50 E484 Attractive, Hydrogen Bonds 2.80 View
7KMG D-F R50 E484 Attractive 3.43 View
7KMG D-F R50 E484 Attractive 3.81 View
7KMG D-F R50 E484 Attractive 4.73 View
7KMG D-F R50 E484 Attractive 5.03 View
7KMG D-F R50 E484 Attractive, Hydrogen Bonds 2.81 View
7KMG D-F R50 E484 Attractive 3.94 View
7KMG D-F Y101 E484 Hydrophobic 4.33 View
7KMG_africa_mut D-F I52 F490 Hydrophobic 4.46 View
7KMG_africa_mut D-F I52 F490 Hydrophobic 4.42 View
7KMG_africa_mut D-F I54 L452 Hydrophobic 4.39 View
7KMG_africa_mut D-F I54 L452 Hydrophobic 4.42 View
7KMG_africa_mut D-F I54 L452 Hydrophobic 3.94 View
7KMG_africa_mut D-F I54 L452 Hydrophobic 3.74 View
7KMG_africa_mut D-F I54 L452 Hydrophobic 3.99 View
7KMG_africa_mut D-F L55 T470 Hydrophobic 4.04 View
7KMG_africa_mut D-F L55 F490 Hydrophobic 4.05 View
7KMG_africa_mut D-F L55 F490 Hydrophobic 3.56 View
7KMG_africa_mut D-F L55 F490 Hydrophobic 2.96 View
7KMG_africa_mut D-F L55 L492 Hydrophobic 4.03 View
7KMG_africa_mut D-F L55 L492 Hydrophobic 4.32 View
7KMG_africa_mut D-F I57 T470 Hydrophobic 4.31 View
7KMG_africa_mut D-F K74 N450 Hydrogen Bonds 2.94 View
7KMG_africa_mut D-F Y110 K484 Hydrophobic 4.24 View
7KMG_africa_mut D-F Y110 K484 Hydrogen Bonds 3.86 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph