VTR

10 main matches found (13 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.83

VTR = 0.08

Average AVD = 0.73 Å

Parameters

Chains(7KFX.pdb ): A versus L

Chains(7KFX_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KFX 627 3 0 12 0 0 0 15
B7KFX_africa_mut 627 13 0 12 0 0 0 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L Y505 E27 Y501 E27 Hydrophobic Hydrophobic 1.23 View
A-L A-L Q493 Y32 Q493 Y32 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-L A-L Y505 E27 Y501 E27 Hydrogen Bonds Hydrogen Bonds 1.75 View
A-L A-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.71 View
A-L A-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.91 View
A-L A-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-L A-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-L A-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.74 View
A-L A-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 0.85 View
A-L A-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.79 View
A-L A-L S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-L A-L Y453 Y32 Y453 Y32 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-L A-L T500 G28 T500 G28 Hydrogen Bonds Hydrogen Bonds 0.8 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KFX | 7KFX_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KFX A-L K417 Y94 Hydrogen Bonds 3.66 View
7KFX A-L G502 G28 Hydrogen Bonds 3.82 View
7KFX_africa_mut A-L Y495 Y32 Hydrogen Bonds 3.66 View
7KFX_africa_mut A-L Y501 I2 Hydrophobic 4.18 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 4.43 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 4.05 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 4.26 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 4.34 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 4.46 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 3.61 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 3.95 View
7KFX_africa_mut A-L Y501 E27 Hydrophobic 3.61 View
7KFX_africa_mut A-L Y501 G28 Hydrogen Bonds 3.85 View
7KFX_africa_mut A-L Y501 I29 Hydrophobic 4.01 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph