VTR

14 main matches found (27 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.88

VTR = 0.06

Average AVD = 0.81 Å

Parameters

Chains(7KFV.pdb ): A versus L

Chains(7KFV_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KFV 1875 14 0 18 0 0 0 32
B7KFV_africa_mut 1875 20 0 16 0 0 0 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 0.85 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 0.73 View
A-L A-L G496 S30 G496 S30 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 1.24 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 0.85 View
A-L A-L T500 G28 T500 G28 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 1.3 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 1.01 View
A-L A-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.68 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 1.26 View
A-L A-L Y453 Y32 Y453 Y32 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 0.75 View
A-L A-L G502 G28 G502 G28 Hydrogen Bonds Hydrogen Bonds 1.23 View
A-L A-L Q498 S30 Q498 S30 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 1.0 View
A-L A-L Q498 S30 Q498 S30 Hydrogen Bonds Hydrogen Bonds 0.57 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 1.11 View
A-L A-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-L A-L Y495 Y32 Y495 Y32 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-L A-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.54 View
A-L A-L R403 I92 R403 I92 Hydrogen Bonds Hydrogen Bonds 1.26 View
A-L A-L Q498 S30 Q498 S30 Hydrogen Bonds Hydrogen Bonds 0.5 View
A-L A-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-L A-L R403 I92 R403 I92 Hydrogen Bonds Hydrogen Bonds 1.35 View
A-L A-L Y505 I92 Y505 I92 Hydrophobic Hydrophobic 0.62 View
A-L A-L S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-L A-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 1.35 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KFV | 7KFV_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KFV A-L K417 Y94 Hydrogen Bonds 3.85 View
7KFV A-L N501 S30 Hydrogen Bonds 3.66 View
7KFV A-L N501 S30 Hydrogen Bonds 2.63 View
7KFV A-L N501 S30 Hydrogen Bonds 3.73 View
7KFV A-L Y505 I92 Hydrophobic 3.91 View
7KFV_africa_mut A-L Y501 Q27 Hydrophobic 3.69 View
7KFV_africa_mut A-L Y501 Q27 Hydrophobic 3.02 View
7KFV_africa_mut A-L Y501 Q27 Hydrophobic 4.01 View
7KFV_africa_mut A-L Y501 Q27 Hydrogen Bonds 2.88 View
7KFV_africa_mut A-L Y501 Q27 Hydrogen Bonds 3.68 View
7KFV_africa_mut A-L Y505 I92 Hydrophobic 4.38 View
7KFV_africa_mut A-L Y505 I92 Hydrophobic 3.64 View
7KFV_africa_mut A-L Y505 I92 Hydrophobic 4.33 View
7KFV_africa_mut A-L Y505 I92 Hydrophobic 3.52 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph