VTR

14 main matches found (43 matches in total )

Execution time: 12.0 seconds

Match RMSD = 0.53

VTR = 0.01

Average AVD = 0.5 Å

Parameters

Chains(7K9Z.pdb ): E versus H

Chains(7K9Z_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K9Z 1041 30 8 7 0 1 0 46
B7K9Z_africa_mut 1041 35 8 7 0 1 0 51

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-E H-E I52 T470 I52 T470 Hydrophobic Hydrophobic 0.9 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.32 View
H-E H-E R96 E471 R96 E471 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.39 View
H-E H-E G97 T470 G97 T470 Hydrogen Bonds Hydrogen Bonds 0.45 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.36 View
H-E H-E R96 E471 R96 E471 Attractive Attractive 0.38 View
H-E H-E I52 F490 I52 F490 Hydrophobic Hydrophobic 0.72 View
H-E H-E R96 E471 R96 E471 Attractive Attractive 0.29 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.34 View
H-E H-E F54 F490 F54 F490 Hydrophobic Hydrophobic 0.39 View
H-E H-E T56 L452 T56 L452 Hydrophobic Hydrophobic 0.43 View
H-E H-E F54 L492 F54 L492 Hydrophobic Hydrophobic 0.31 View
H-E H-E M53 F490 M53 F490 Hydrophobic Hydrophobic 0.65 View
H-E H-E T56 N450 T56 N450 Hydrophobic Hydrophobic 0.39 View
H-E H-E M53 F490 M53 F490 Hydrophobic Hydrophobic 0.74 View
H-E H-E R96 E471 R96 E471 Attractive Attractive 0.59 View
H-E H-E T56 L452 T56 L452 Hydrophobic Hydrophobic 0.54 View
H-E H-E R96 S469 R96 S469 Hydrogen Bonds Hydrogen Bonds 0.36 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.43 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.53 View
H-E H-E R96 E471 R96 E471 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.32 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.45 View
H-E H-E F54 F490 F54 F490 Hydrophobic Hydrophobic 0.5 View
H-E H-E T56 L452 T56 L452 Hydrophobic Hydrophobic 0.45 View
H-E H-E D98 S469 D98 S469 Hydrogen Bonds Hydrogen Bonds 0.59 View
H-E H-E Y32 G482 Y32 G482 Hydrogen Bonds Hydrogen Bonds 0.48 View
H-E H-E M53 F490 M53 F490 Hydrophobic Hydrophobic 1.05 View
H-E H-E I52 L452 I52 L452 Hydrophobic Hydrophobic 0.74 View
H-E H-E M53 F490 M53 F490 Hydrophobic Hydrophobic 0.65 View
H-E H-E R96 E471 R96 E471 Attractive Attractive 0.21 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.49 View
H-E H-E R96 E471 R96 E471 Attractive Attractive 0.51 View
H-E H-E F54 F490 F54 F490 Hydrophobic Hydrophobic 0.51 View
H-E H-E I52 F490 I52 F490 Hydrophobic Hydrophobic 0.63 View
H-E H-E I52 L492 I52 L492 Hydrophobic Hydrophobic 0.64 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.51 View
H-E H-E F54 F490 F54 F490 Hydrophobic Hydrophobic 0.42 View
H-E H-E F54 L452 F54 L452 Hydrophobic Hydrophobic 0.38 View
H-E H-E F54 L492 F54 L492 Hydrophobic Hydrophobic 0.28 View
H-E H-E R96 E471 R96 E471 Attractive Attractive 0.31 View
H-E H-E D98 D467 D98 D467 Repulsive Repulsive 0.78 View
H-E H-E F54 F490 F54 F490 Hydrophobic Hydrophobic 0.48 View
H-E H-E Q64 R346 Q64 R346 Hydrogen Bonds Hydrogen Bonds 0.47 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K9Z | 7K9Z_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K9Z H-E M53 F490 Hydrophobic 3.93 View
7K9Z_africa_mut H-E F54 L452 Hydrophobic 4.48 View
7K9Z_africa_mut H-E F54 L452 Hydrophobic 4.13 View
7K9Z_africa_mut H-E F54 L452 Hydrophobic 4.13 View
7K9Z_africa_mut H-E F54 L452 Hydrophobic 3.89 View
7K9Z_africa_mut H-E F54 L452 Hydrophobic 4.23 View
7K9Z_africa_mut H-E F54 L452 Hydrophobic 3.94 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph