VTR

9 main matches found (22 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.53

VTR = 0.02

Average AVD = 0.41 Å

Parameters

Chains(7K9Z.pdb ): E versus B

Chains(7K9Z_africa_mut.pdb ) E versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K9Z 1041 13 0 8 0 0 3 24
B7K9Z_africa_mut 1041 18 0 7 0 0 3 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-E B-E D95 Y489 D95 Y489 Hydrogen Bonds Hydrogen Bonds 0.58 View
B-E B-E Y32 F456 Y32 F456 Hydrophobic Hydrophobic 0.45 View
B-E B-E T31 Q493 T31 Q493 Hydrophobic Hydrophobic 0.31 View
B-E B-E R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.65 View
B-E B-E W47 F486 W47 F486 Aromatic Stacking Aromatic Stacking 0.23 View
B-E B-E Y32 Y489 Y32 Y489 Hydrophobic Hydrophobic 0.34 View
B-E B-E D58 F486 D58 F486 Hydrogen Bonds Hydrogen Bonds 0.38 View
B-E B-E Y32 Y489 Y32 Y489 Hydrophobic Hydrophobic 0.31 View
B-E B-E W47 F486 W47 F486 Hydrophobic Hydrophobic 0.17 View
B-E B-E W50 Y489 W50 Y489 Hydrophobic Hydrophobic 0.28 View
B-E B-E W50 E484 W50 K484 Hydrophobic Hydrophobic 0.54 View
B-E B-E W50 Y489 W50 Y489 Hydrophobic Hydrophobic 0.26 View
B-E B-E S52 E484 S52 K484 Hydrogen Bonds Hydrogen Bonds 1.77 View
B-E B-E W50 F486 W50 F486 Hydrophobic Hydrophobic 0.2 View
B-E B-E W47 F486 W47 F486 Hydrophobic Hydrophobic 0.2 View
B-E B-E W50 E484 W50 K484 Hydrophobic Hydrophobic 0.53 View
B-E B-E R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-E B-E W50 Y489 W50 Y489 Aromatic Stacking Aromatic Stacking 0.19 View
B-E B-E R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.57 View
B-E B-E W50 F486 W50 F486 Hydrophobic Hydrophobic 0.21 View
B-E B-E Y32 Y489 Y32 Y489 Aromatic Stacking Aromatic Stacking 0.32 View
B-E B-E W47 F486 W47 F486 Hydrophobic Hydrophobic 0.16 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K9Z | 7K9Z_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K9Z B-E S54 E484 Hydrogen Bonds 3.82 View
7K9Z B-E S54 E484 Hydrogen Bonds 3.17 View
7K9Z_africa_mut B-E Y32 Y489 Hydrogen Bonds 3.88 View
7K9Z_africa_mut B-E W50 K484 Hydrophobic 4.20 View
7K9Z_africa_mut B-E W50 K484 Hydrophobic 3.76 View
7K9Z_africa_mut B-E W50 K484 Hydrophobic 4.15 View
7K9Z_africa_mut B-E W50 K484 Hydrophobic 3.49 View
7K9Z_africa_mut B-E W50 K484 Hydrophobic 3.39 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph