VTR

5 main matches found (15 matches in total )

Execution time: 29.0 seconds

Match RMSD = 0.74

VTR = 0.06

Average AVD = 0.64 Å

Parameters

Chains(7K90.pdb ): C versus O

Chains(7K90_africa_mut.pdb ) C versus O

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K90 3645 10 0 7 0 0 0 17
B7K90_africa_mut 3642 16 0 9 0 0 0 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-O C-O E484 Y52 K484 Y52 Hydrophobic Hydrophobic 1.14 View
C-O C-O E484 Y52 K484 Y52 Hydrophobic Hydrophobic 1.73 View
C-O C-O Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.45 View
C-O C-O Y449 F27 Y449 F27 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-O C-O S494 N31 S494 N31 Hydrogen Bonds Hydrogen Bonds 0.48 View
C-O C-O Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.41 View
C-O C-O Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.42 View
C-O C-O E484 Y52 K484 Y52 Hydrophobic Hydrophobic 0.52 View
C-O C-O Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.46 View
C-O C-O Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.39 View
C-O C-O E484 Y52 K484 Y52 Hydrophobic Hydrophobic 1.14 View
C-O C-O Y449 G26 Y449 G26 Hydrogen Bonds Hydrogen Bonds 0.47 View
C-O C-O Y449 K73 Y449 K73 Hydrogen Bonds Hydrogen Bonds 0.71 View
C-O C-O Y449 G26 Y449 G26 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-O C-O Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.36 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K90 | 7K90_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K90 C-O E484 S56 Hydrogen Bonds 3.41 View
7K90 C-O E484 S56 Hydrogen Bonds 2.43 View
7K90_africa_mut C-O K484 Y33 Hydrophobic 4.20 View
7K90_africa_mut C-O K484 Y33 Hydrogen Bonds 2.75 View
7K90_africa_mut C-O K484 Y52 Hydrophobic 4.26 View
7K90_africa_mut C-O K484 Y52 Hydrophobic 4.38 View
7K90_africa_mut C-O K484 Y52 Hydrophobic 4.49 View
7K90_africa_mut C-O K484 Y52 Hydrophobic 3.68 View
7K90_africa_mut C-O K484 Y52 Hydrophobic 4.49 View
7K90_africa_mut C-O K484 S53 Hydrogen Bonds 3.62 View
7K90_africa_mut C-O K484 Y58 Hydrogen Bonds 3.87 View
7K90_africa_mut C-O S494 N31 Hydrogen Bonds 2.97 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph