VTR
7 main matches found
(10 matches in total )Execution time: 25.0 seconds
Match RMSD = 0.36
VTR = 0.01
Average AVD = 0.34 Å
Parameters
Chains(7K8Y.pdb ): D versus I
Chains(7K8Y_africa_mut.pdb ) D versus I
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
| Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
|---|---|---|---|---|---|---|---|---|
| A7K8Y | 3238 | 3 | 0 | 4 | 0 | 3 | 0 | 10 |
| B7K8Y_africa_mut | 3229 | 3 | 0 | 5 | 0 | 4 | 0 | 12 |
Matches
(Conservatives hydrophobic matches are hidden by default)
| Chains | Residues | Contact types | |||||||
|---|---|---|---|---|---|---|---|---|---|
| A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
| D-I | D-I | R408 | K66 | R408 | K66 | Repulsive | Repulsive | 0.44 | View |
| D-I | D-I | D405 | S67 | D405 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.31 | View |
| D-I | D-I | R408 | K66 | R408 | K66 | Hydrophobic | Hydrophobic | 0.4 | View |
| D-I | D-I | R408 | K66 | R408 | K66 | Repulsive | Repulsive | 0.43 | View |
| D-I | D-I | R408 | K66 | R408 | K66 | Repulsive | Repulsive | 0.54 | View |
| D-I | D-I | T415 | S52 | T415 | S52 | Hydrogen Bonds | Hydrogen Bonds | 0.3 | View |
| D-I | D-I | R408 | K66 | R408 | K66 | Hydrophobic | Hydrophobic | 0.16 | View |
| D-I | D-I | G504 | S67 | G504 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.3 | View |
| D-I | D-I | R408 | K66 | R408 | K66 | Hydrogen Bonds | Hydrogen Bonds | 0.27 | View |
| D-I | D-I | R408 | K66 | R408 | K66 | Hydrophobic | Hydrophobic | 0.29 | View |