VTR

9 main matches found (26 matches in total )

Execution time: 33.0 seconds

Match RMSD = 0.67

VTR = 0.06

Average AVD = 0.6 Å

Parameters

Chains(7K8X.pdb ): B versus D

Chains(7K8X_africa_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8X 3470 21 1 10 0 0 1 33
B7K8X_africa_mut 3461 31 0 13 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.36 View
B-D B-D Y449 Y27 Y449 Y27 Hydrogen Bonds Hydrogen Bonds 0.71 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.64 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.59 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.42 View
B-D B-D Q493 P103 Q493 P103 Hydrogen Bonds Hydrogen Bonds 1.05 View
B-D B-D Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.78 View
B-D B-D Y489 G110 Y489 G110 Hydrogen Bonds Hydrogen Bonds 0.54 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.62 View
B-D B-D E484 Y113 K484 Y113 Hydrophobic Hydrophobic 1.8 View
B-D B-D Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.53 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.4 View
B-D B-D Y489 G105 Y489 G105 Hydrogen Bonds Hydrogen Bonds 0.7 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.33 View
B-D B-D S494 T30 S494 T30 Hydrogen Bonds Hydrogen Bonds 0.69 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.36 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.68 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.65 View
B-D B-D Y489 D111 Y489 D111 Hydrogen Bonds Hydrogen Bonds 0.35 View
B-D B-D Y489 A109 Y489 A109 Hydrogen Bonds Hydrogen Bonds 0.45 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.68 View
B-D B-D F490 V54 F490 V54 Hydrophobic Hydrophobic 0.5 View
B-D B-D L452 V54 L452 V54 Hydrophobic Hydrophobic 0.58 View
B-D B-D F486 Y113 F486 Y113 Aromatic Stacking Aromatic Stacking 0.3 View
B-D B-D F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.36 View
B-D B-D Y449 F29 Y449 F29 Hydrogen Bonds Hydrogen Bonds 0.64 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8X | 7K8X_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8X B-D E484 H35 Attractive 5.65 View
7K8X B-D E484 W50 Hydrophobic 3.18 View
7K8X B-D E484 W50 Hydrophobic 4.24 View
7K8X B-D E484 W50 Hydrophobic 3.29 View
7K8X B-D E484 W50 Hydrogen Bonds 3.85 View
7K8X B-D E484 Y112 Hydrogen Bonds 3.40 View
7K8X B-D E484 Y113 Hydrophobic 4.24 View
7K8X_africa_mut B-D Y449 F29 Hydrophobic 3.89 View
7K8X_africa_mut B-D Y449 T30 Hydrophobic 3.59 View
7K8X_africa_mut B-D Y449 T30 Hydrophobic 3.26 View
7K8X_africa_mut B-D Y449 T30 Hydrophobic 4.01 View
7K8X_africa_mut B-D L452 V54 Hydrophobic 4.42 View
7K8X_africa_mut B-D F456 V106 Hydrophobic 4.12 View
7K8X_africa_mut B-D F456 V106 Hydrophobic 4.04 View
7K8X_africa_mut B-D F456 V106 Hydrophobic 4.27 View
7K8X_africa_mut B-D F456 V106 Hydrophobic 4.48 View
7K8X_africa_mut B-D A475 V106 Hydrophobic 4.45 View
7K8X_africa_mut B-D K484 Y33 Hydrogen Bonds 2.90 View
7K8X_africa_mut B-D K484 Y113 Hydrogen Bonds 3.19 View
7K8X_africa_mut B-D F486 Y113 Hydrophobic 4.46 View
7K8X_africa_mut B-D F486 Y113 Hydrophobic 4.46 View
7K8X_africa_mut B-D F486 Y114 Hydrophobic 4.19 View
7K8X_africa_mut B-D Y489 V106 Hydrogen Bonds 2.66 View
7K8X_africa_mut B-D Y489 L107 Hydrogen Bonds 3.89 View
7K8X_africa_mut B-D Y489 L107 Hydrogen Bonds 3.65 View
7K8X_africa_mut B-D L492 V54 Hydrophobic 4.42 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph