VTR

11 main matches found (23 matches in total )

Execution time: 25.0 seconds

Match RMSD = 0.58

VTR = 0.03

Average AVD = 0.51 Å

Parameters

Chains(7K8W.pdb ): G versus S

Chains(7K8W_africa_mut.pdb ) G versus S

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8W 3365 12 1 10 0 0 1 24
B7K8W_africa_mut 3362 21 0 9 0 1 1 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.26 View
G-S G-S Y449 Y90 Y449 Y90 Aromatic Stacking Aromatic Stacking 0.36 View
G-S G-S L452 Y29 L452 Y29 Hydrophobic Hydrophobic 0.41 View
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.31 View
G-S G-S L452 Y29 L452 Y29 Hydrophobic Hydrophobic 0.58 View
G-S G-S N450 S92 N450 S92 Hydrogen Bonds Hydrogen Bonds 0.86 View
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.34 View
G-S G-S L452 Y29 L452 Y29 Hydrophobic Hydrophobic 0.69 View
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.24 View
G-S G-S Y449 Y29 Y449 Y29 Hydrogen Bonds Hydrogen Bonds 0.55 View
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.32 View
G-S G-S Y449 Y90 Y449 Y90 Hydrogen Bonds Hydrogen Bonds 0.4 View
G-S G-S E484 K30 K484 K30 Attractive Repulsive 1.5 View
G-S G-S N450 Y29 N450 Y29 Hydrogen Bonds Hydrogen Bonds 0.51 View
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.34 View
G-S G-S N450 S92 N450 S92 Hydrogen Bonds Hydrogen Bonds 0.89 View
G-S G-S N450 Y29 N450 Y29 Hydrogen Bonds Hydrogen Bonds 0.44 View
G-S G-S Y449 Y90 Y449 Y90 Hydrophobic Hydrophobic 0.3 View
G-S G-S N450 Y90 N450 Y90 Hydrogen Bonds Hydrogen Bonds 0.29 View
G-S G-S L452 Y29 L452 Y29 Hydrophobic Hydrophobic 0.41 View
G-S G-S Q493 K30 Q493 K30 Hydrogen Bonds Hydrogen Bonds 0.9 View
G-S G-S N450 Y29 N450 Y29 Hydrogen Bonds Hydrogen Bonds 0.46 View
G-S G-S L452 Y29 L452 Y29 Hydrophobic Hydrophobic 0.29 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8W | 7K8W_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8W G-S N450 S92 Hydrogen Bonds 3.69 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.24 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.28 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.44 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.47 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.28 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.49 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.22 View
7K8W_africa_mut G-S Y449 Y90 Hydrophobic 4.46 View
7K8W_africa_mut G-S L452 Y29 Hydrophobic 4.17 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph