VTR

4 main matches found (6 matches in total )

Execution time: 26.0 seconds

Match RMSD = 0.97

VTR = 0.12

Average AVD = 0.88 Å

Parameters

Chains(7K8V.pdb ): C versus N

Chains(7K8V_africa_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8V 3360 6 0 4 0 0 0 10
B7K8V_africa_mut 3357 11 0 7 0 0 0 18

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N R346 S52 R346 S52 Hydrogen Bonds Hydrogen Bonds 0.65 View
C-N C-N R346 Q50 R346 Q50 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-N C-N N448 W32 N448 W32 Hydrophobic Hydrophobic 1.69 View
C-N C-N R346 S52 R346 S52 Hydrogen Bonds Hydrogen Bonds 0.52 View
C-N C-N R509 Y31 R509 Y31 Hydrogen Bonds Hydrogen Bonds 0.83 View
C-N C-N L441 Y31 L441 Y31 Hydrophobic Hydrophobic 1.07 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8V | 7K8V_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8V C-N D442 Y31 Hydrophobic 4.03 View
7K8V C-N N448 W32 Hydrophobic 4.07 View
7K8V C-N T500 Y94 Hydrophobic 3.63 View
7K8V C-N T500 Y94 Hydrophobic 3.80 View
7K8V_africa_mut C-N R346 Q50 Hydrogen Bonds 3.21 View
7K8V_africa_mut C-N R346 Q50 Hydrogen Bonds 3.89 View
7K8V_africa_mut C-N F347 Y31 Hydrophobic 4.32 View
7K8V_africa_mut C-N F347 Y31 Hydrophobic 4.40 View
7K8V_africa_mut C-N L441 Y31 Hydrophobic 4.25 View
7K8V_africa_mut C-N L441 Y31 Hydrophobic 3.27 View
7K8V_africa_mut C-N L441 Y31 Hydrophobic 3.46 View
7K8V_africa_mut C-N L441 Y31 Hydrophobic 4.05 View
7K8V_africa_mut C-N N448 W32 Hydrophobic 4.30 View
7K8V_africa_mut C-N N448 W32 Hydrophobic 3.75 View
7K8V_africa_mut C-N N448 W32 Hydrogen Bonds 2.59 View
7K8V_africa_mut C-N P499 Y94 Hydrophobic 4.14 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph