VTR

2 main matches found (3 matches in total )

Execution time: 23.0 seconds

Match RMSD = 0.54

VTR = 0.1

Average AVD = 0.53 Å

Parameters

Chains(7K8U.pdb ): B versus L

Chains(7K8U_africa_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8U 3181 1 0 2 0 0 0 3
B7K8U_africa_mut 3178 10 0 5 0 2 0 17

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-L B-L V503 D71 V503 D71 Hydrophobic Hydrophobic 0.48 View
B-L B-L R408 G65 R408 G65 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-L B-L R408 G65 R408 G65 Hydrogen Bonds Hydrogen Bonds 0.45 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8U | 7K8U_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8U_africa_mut B-L D405 S66 Hydrogen Bonds 3.71 View
7K8U_africa_mut B-L D405 D71 Repulsive 4.19 View
7K8U_africa_mut B-L D405 D71 Repulsive 5.64 View
7K8U_africa_mut B-L R408 S53 Hydrogen Bonds 3.06 View
7K8U_africa_mut B-L V503 W24 Hydrophobic 3.68 View
7K8U_africa_mut B-L V503 W24 Hydrophobic 4.23 View
7K8U_africa_mut B-L V503 W24 Hydrophobic 3.79 View
7K8U_africa_mut B-L V503 W24 Hydrophobic 3.25 View
7K8U_africa_mut B-L V503 W24 Hydrophobic 4.21 View
7K8U_africa_mut B-L V503 T70 Hydrophobic 3.86 View
7K8U_africa_mut B-L V503 T70 Hydrophobic 3.47 View
7K8U_africa_mut B-L V503 T70 Hydrophobic 3.76 View
7K8U_africa_mut B-L V503 D71 Hydrophobic 4.42 View
7K8U_africa_mut B-L G504 D71 Hydrogen Bonds 3.45 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph