VTR

7 main matches found (17 matches in total )

Execution time: 30.0 seconds

Match RMSD = 0.66

VTR = 0.03

Average AVD = 0.58 Å

Parameters

Chains(7K8T.pdb ): A versus O

Chains(7K8T_africa_mut.pdb ) A versus O

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8T 3666 10 0 9 0 0 0 19
B7K8T_africa_mut 3657 16 0 9 0 0 0 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-O A-O F490 I31 F490 I31 Hydrophobic Hydrophobic 0.85 View
A-O A-O F490 I31 F490 I31 Hydrophobic Hydrophobic 0.73 View
A-O A-O L492 R97 L492 R97 Hydrogen Bonds Hydrogen Bonds 0.79 View
A-O A-O L452 I31 L452 I31 Hydrophobic Hydrophobic 0.67 View
A-O A-O N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.17 View
A-O A-O Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.74 View
A-O A-O L452 I31 L452 I31 Hydrophobic Hydrophobic 0.67 View
A-O A-O Q493 R97 Q493 R97 Hydrophobic Hydrophobic 1.18 View
A-O A-O Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.58 View
A-O A-O N481 Y58 N481 Y58 Hydrophobic Hydrophobic 0.18 View
A-O A-O Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.71 View
A-O A-O Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.35 View
A-O A-O N481 Y58 N481 Y58 Hydrogen Bonds Hydrogen Bonds 0.43 View
A-O A-O N481 Y58 N481 Y58 Hydrogen Bonds Hydrogen Bonds 0.09 View
A-O A-O Y473 N56 Y473 N56 Hydrogen Bonds Hydrogen Bonds 0.48 View
A-O A-O C480 Y58 C480 Y58 Hydrogen Bonds Hydrogen Bonds 0.2 View
A-O A-O Q493 R97 Q493 P98 Hydrogen Bonds Hydrogen Bonds 1.11 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8T | 7K8T_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8T A-O Q493 P98 Hydrogen Bonds 3.86 View
7K8T A-O Y505 D100 Hydrogen Bonds 3.67 View
7K8T_africa_mut A-O Y449 V2 Hydrophobic 4.36 View
7K8T_africa_mut A-O Y449 V2 Hydrophobic 3.83 View
7K8T_africa_mut A-O Y449 V2 Hydrophobic 3.48 View
7K8T_africa_mut A-O Y449 F27 Hydrophobic 4.06 View
7K8T_africa_mut A-O Y449 F27 Hydrophobic 4.46 View
7K8T_africa_mut A-O F490 R97 Hydrogen Bonds 3.09 View
7K8T_africa_mut A-O Q493 R97 Hydrophobic 3.59 View
7K8T_africa_mut A-O Q493 R97 Hydrogen Bonds 3.15 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph