VTR

3 main matches found (3 matches in total )

Execution time: 27.0 seconds

Match RMSD = 0.61

VTR = 0.08

Average AVD = 0.61 Å

Parameters

Chains(7K8S.pdb ): C versus L

Chains(7K8S_africa_mut.pdb ) C versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8S 3675 0 0 3 0 0 0 3
B7K8S_africa_mut 3666 0 0 6 0 0 0 6

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-L C-L N440 S52 N440 S52 Hydrogen Bonds Hydrogen Bonds 0.59 View
C-L C-L K444 S63 K444 S63 Hydrogen Bonds Hydrogen Bonds 0.67 View
C-L C-L N440 S52 N440 S52 Hydrogen Bonds Hydrogen Bonds 0.58 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8S | 7K8S_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8S_africa_mut C-L N440 A50 Hydrogen Bonds 3.40 View
7K8S_africa_mut C-L N440 S52 Hydrogen Bonds 3.60 View
7K8S_africa_mut C-L T500 S60 Hydrogen Bonds 3.86 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph