VTR

8 main matches found (18 matches in total )

Execution time: 79.0 seconds

Match RMSD = 1.09

VTR = 0.09

Average AVD = 0.99 Å

Parameters

Chains(7K8S.pdb ): A versus H

Chains(7K8S_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8S 3675 11 5 7 0 4 0 27
B7K8S_africa_mut 3666 16 1 10 0 2 0 29

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Q493 R97 Q493 R97 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-H A-H Q493 S99 Q493 S99 Hydrogen Bonds Hydrogen Bonds 1.49 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 1.53 View
A-H A-H E484 E95 K484 E95 Repulsive Attractive 1.97 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.63 View
A-H A-H E484 H35 K484 H35 Attractive Repulsive 1.8 View
A-H A-H N481 Y58 N481 Y58 Hydrogen Bonds Hydrogen Bonds 0.61 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.57 View
A-H A-H N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.6 View
A-H A-H Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.44 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 1.09 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 1.09 View
A-H A-H Q493 R97 Q493 R97 Hydrogen Bonds Hydrogen Bonds 0.83 View
A-H A-H Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.75 View
A-H A-H Y449 V2 Y449 V2 Hydrophobic Hydrophobic 1.04 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.65 View
A-H A-H Q493 P98 Q493 P98 Hydrogen Bonds Hydrogen Bonds 1.32 View
A-H A-H Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.97 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8S | 7K8S_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8S A-H R403 D100 Attractive 5.74 View
7K8S A-H T470 I31 Hydrophobic 4.29 View
7K8S A-H E484 H35 Attractive 4.68 View
7K8S A-H E484 H35 Attractive 4.34 View
7K8S A-H E484 H35 Attractive, Hydrogen Bonds 3.09 View
7K8S A-H E484 E95 Repulsive 5.84 View
7K8S A-H E484 E95 Repulsive 4.22 View
7K8S A-H E484 E95 Repulsive 3.35 View
7K8S_africa_mut A-H Y449 V2 Hydrophobic 3.31 View
7K8S_africa_mut A-H Y449 V2 Hydrophobic 4.44 View
7K8S_africa_mut A-H Y449 F27 Hydrophobic 3.77 View
7K8S_africa_mut A-H Y449 S99 Hydrogen Bonds 3.43 View
7K8S_africa_mut A-H K484 H35 Repulsive 5.69 View
7K8S_africa_mut A-H F490 I31 Hydrophobic 4.36 View
7K8S_africa_mut A-H F490 I31 Hydrophobic 3.44 View
7K8S_africa_mut A-H F490 R97 Hydrogen Bonds 3.65 View
7K8S_africa_mut A-H L492 I31 Hydrophobic 4.23 View
7K8S_africa_mut A-H S494 Y32 Hydrogen Bonds 3.73 View
7K8S_africa_mut A-H S494 S99 Hydrogen Bonds 3.63 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph