VTR

1 main matches found (2 matches in total )

Execution time: 18.0 seconds

Match RMSD = 0.33

VTR = 0.06

Average AVD = 0.33 Å

Parameters

Chains(7K4N.pdb ): E versus F

Chains(7K4N_africa_mut.pdb ) E versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K4N 3651 1 0 1 0 0 0 2
B7K4N_africa_mut 3645 18 0 5 0 0 1 24

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-F E-F A475 C106 A475 C106 Hydrophobic Hydrophobic 0.3 View
E-F E-F A475 C106 A475 C106 Hydrogen Bonds Hydrogen Bonds 0.35 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K4N | 7K4N_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K4N_africa_mut E-F F486 W50 Aromatic Stacking 5.51 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 3.21 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 4.48 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 3.57 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 2.94 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 4.32 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 3.14 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 4.19 View
7K4N_africa_mut E-F F486 W50 Hydrophobic 4.25 View
7K4N_africa_mut E-F F486 P99 Hydrophobic 4.37 View
7K4N_africa_mut E-F F486 P99 Hydrophobic 3.50 View
7K4N_africa_mut E-F F486 P99 Hydrophobic 4.31 View
7K4N_africa_mut E-F F486 P99 Hydrophobic 4.16 View
7K4N_africa_mut E-F F486 P99 Hydrophobic 3.49 View
7K4N_africa_mut E-F F486 P99 Hydrophobic 3.02 View
7K4N_africa_mut E-F Y489 V52 Hydrophobic 4.37 View
7K4N_africa_mut E-F Y489 V52 Hydrophobic 4.09 View
7K4N_africa_mut E-F Y489 V52 Hydrophobic 4.44 View
7K4N_africa_mut E-F Y489 S55 Hydrogen Bonds 3.61 View
7K4N_africa_mut E-F Y489 S55 Hydrogen Bonds 3.33 View
7K4N_africa_mut E-F Q493 G54 Hydrogen Bonds 3.17 View
7K4N_africa_mut E-F Q493 S55 Hydrogen Bonds 3.29 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph