VTR

16 main matches found (44 matches in total )

Execution time: 88.0 seconds

Match RMSD = 0.71

VTR = 0.01

Average AVD = 0.62 Å

Parameters

Chains(7JWB.pdb ): C versus D

Chains(7JWB_africa_mut.pdb ) C versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JWB 3289 29 0 12 0 0 4 45
B7JWB_africa_mut 3286 32 0 13 0 0 4 49

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 0.71 View
D-C D-C F397 Y453 F397 Y453 Aromatic Stacking Aromatic Stacking 0.71 View
D-C D-C Y327 Y505 Y327 Y505 Aromatic Stacking Aromatic Stacking 0.14 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 0.49 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 1.22 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 0.44 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 1.26 View
D-C D-C P349 Y449 P349 Y449 Hydrogen Bonds Hydrogen Bonds 0.41 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.37 View
D-C D-C F397 K417 F397 N417 Hydrophobic Hydrophobic 0.77 View
D-C D-C S325 Y505 S325 Y505 Hydrogen Bonds Hydrogen Bonds 0.36 View
D-C D-C Y324 Y505 Y324 Y505 Hydrogen Bonds Hydrogen Bonds 0.33 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.42 View
D-C D-C Y348 Q493 Y348 Q493 Hydrophobic Hydrophobic 0.9 View
D-C D-C F397 Q493 F397 Q493 Hydrophobic Hydrophobic 1.01 View
D-C D-C Y327 Y453 Y327 Y453 Aromatic Stacking Aromatic Stacking 0.66 View
D-C D-C Y353 L452 Y353 L452 Hydrophobic Hydrophobic 0.35 View
D-C D-C S350 G496 S350 G496 Hydrogen Bonds Hydrogen Bonds 0.65 View
D-C D-C F397 Q493 F397 Q493 Hydrophobic Hydrophobic 1.0 View
D-C D-C Y327 G496 Y327 G496 Hydrogen Bonds Hydrogen Bonds 0.17 View
D-C D-C Y327 R403 Y327 R403 Hydrogen Bonds Hydrogen Bonds 0.18 View
D-C D-C S351 Q493 S351 Q493 Hydrogen Bonds Hydrogen Bonds 0.84 View
D-C D-C Y327 Y505 Y327 Y505 Hydrophobic Hydrophobic 0.14 View
D-C D-C Y324 G496 Y324 G496 Hydrogen Bonds Hydrogen Bonds 0.64 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 1.2 View
D-C D-C Y355 Q493 Y355 Q493 Hydrogen Bonds Hydrogen Bonds 0.35 View
D-C D-C Y348 Q493 Y348 Q493 Hydrophobic Hydrophobic 0.9 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.39 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.4 View
D-C D-C Y329 Q493 Y329 Q493 Hydrophobic 1.77 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.36 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.34 View
D-C D-C Y324 Q498 Y324 Q498 Hydrogen Bonds Hydrogen Bonds 0.41 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 0.54 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.4 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 0.46 View
D-C D-C F397 K417 F397 N417 Hydrophobic Hydrophobic 0.78 View
D-C D-C F397 Q493 F397 Q493 Hydrophobic Hydrophobic 0.92 View
D-C D-C Y327 Y453 Y327 Y453 Hydrophobic Hydrophobic 0.7 View
D-C D-C S351 S494 S351 S494 Hydrogen Bonds Hydrogen Bonds 0.82 View
D-C D-C F397 Q493 F397 Q493 Hydrophobic Hydrophobic 0.91 View
D-C D-C F397 Y453 F397 Y453 Hydrophobic Hydrophobic 0.76 View
D-C D-C Y324 Y505 Y324 Y505 Hydrophobic Hydrophobic 0.42 View
D-C D-C Y324 Y505 Y324 Y505 Aromatic Stacking Aromatic Stacking 0.35 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JWB | 7JWB_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JWB D-C F397 K417 Hydrogen Bonds 3.67 View
7JWB_africa_mut D-C S325 Y505 Hydrogen Bonds 3.36 View
7JWB_africa_mut D-C F397 Y453 Hydrophobic 3.85 View
7JWB_africa_mut D-C F397 Y453 Hydrophobic 4.08 View
7JWB_africa_mut D-C F397 Q493 Hydrophobic 3.69 View
7JWB_africa_mut D-C F397 Q493 Hydrophobic 4.18 View
7JWB_africa_mut D-C G404 N417 Hydrogen Bonds 3.83 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph