VTR

4 main matches found (10 matches in total )

Execution time: 2.0 seconds

Match RMSD = 0.3

VTR = 0.03

Average AVD = 0.29 Å

Parameters

Chains(7JV2.pdb ): A versus L

Chains(7JV2_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JV2 282 8 3 8 0 1 0 20
B7JV2_africa_mut 282 7 0 4 0 2 0 13

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-A L-A A62 Y449 A62 Y449 Hydrophobic Hydrophobic 0.27 View
L-A L-A A62 Y449 A62 Y449 Hydrophobic Hydrophobic 0.32 View
L-A L-A R81 K444 R81 K444 Repulsive Repulsive 0.28 View
L-A L-A R63 Y449 R63 Y449 Hydrophobic Hydrophobic 0.24 View
L-A L-A G79 G446 G79 G446 Hydrogen Bonds Hydrogen Bonds 0.47 View
L-A L-A A62 Y449 A62 Y449 Hydrophobic Hydrophobic 0.27 View
L-A L-A R63 Y449 R63 Y449 Hydrophobic Hydrophobic 0.23 View
L-A L-A S78 Y449 S78 Y449 Hydrogen Bonds Hydrogen Bonds 0.32 View
L-A L-A A62 Y449 A62 Y449 Hydrophobic Hydrophobic 0.3 View
L-A L-A Y51 G485 Y51 G485 Hydrogen Bonds Hydrogen Bonds 0.24 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JV2 | 7JV2_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JV2 L-A H57 E484 Attractive 4.66 View
7JV2 L-A H57 E484 Attractive, Hydrogen Bonds 3.20 View
7JV2 L-A H57 E484 Attractive 5.33 View
7JV2 L-A S58 E484 Hydrogen Bonds 3.69 View
7JV2 L-A S58 E484 Hydrogen Bonds 2.76 View
7JV2 L-A S58 E484 Hydrogen Bonds 2.80 View
7JV2 L-A S58 E484 Hydrogen Bonds 3.80 View
7JV2 L-A W59 E484 Hydrophobic 4.05 View
7JV2 L-A W59 E484 Hydrophobic 4.14 View
7JV2_africa_mut L-A K56 K484 Hydrogen Bonds 3.59 View
7JV2_africa_mut L-A R63 Y449 Hydrophobic 4.44 View
7JV2_africa_mut L-A R81 K444 Repulsive 5.85 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph