VTR

6 main matches found (42 matches in total )

Execution time: 3.0 seconds

Match RMSD = 0.45

VTR = 0.01

Average AVD = 0.42 Å

Parameters

Chains(7JV2.pdb ): A versus H

Chains(7JV2_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JV2 282 37 0 6 0 0 1 44
B7JV2_africa_mut 282 38 0 6 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-A H-A T28 N481 T28 N481 Hydrogen Bonds Hydrogen Bonds 0.28 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.26 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.53 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.67 View
H-A H-A S100 F486 S100 F486 Hydrogen Bonds Hydrogen Bonds 0.33 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.41 View
H-A H-A F27 V483 F27 V483 Hydrophobic Hydrophobic 0.29 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.25 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.24 View
H-A H-A V2 V483 V2 V483 Hydrophobic Hydrophobic 0.42 View
H-A H-A Y109 V483 Y109 V483 Hydrophobic Hydrophobic 0.31 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.22 View
H-A H-A Y109 E484 Y109 K484 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-A H-A Y32 V483 Y32 V483 Hydrophobic Hydrophobic 0.73 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.43 View
H-A H-A Y102 F486 Y102 F486 Aromatic Stacking Aromatic Stacking 0.37 View
H-A H-A Y32 V483 Y32 V483 Hydrophobic Hydrophobic 0.7 View
H-A H-A F27 V483 F27 V483 Hydrophobic Hydrophobic 0.28 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.74 View
H-A H-A F27 V483 F27 V483 Hydrophobic Hydrophobic 0.33 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.7 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.63 View
H-A H-A V2 V483 V2 V483 Hydrophobic Hydrophobic 0.5 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.39 View
H-A H-A L98 V483 L98 V483 Hydrophobic Hydrophobic 0.54 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.26 View
H-A H-A V2 V483 V2 V483 Hydrophobic Hydrophobic 0.33 View
H-A H-A L98 V483 L98 V483 Hydrophobic Hydrophobic 0.46 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.21 View
H-A H-A Y109 V483 Y109 V483 Hydrophobic Hydrophobic 0.32 View
H-A H-A Y32 V483 Y32 V483 Hydrophobic Hydrophobic 0.37 View
H-A H-A S100 E484 S100 K484 Hydrogen Bonds Hydrogen Bonds 0.24 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.68 View
H-A H-A Y32 V483 Y32 V483 Hydrophobic Hydrophobic 0.7 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.19 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.56 View
H-A H-A Y109 G482 Y109 G482 Hydrogen Bonds Hydrogen Bonds 0.36 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.46 View
H-A H-A F27 V483 F27 V483 Hydrophobic Hydrophobic 0.37 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.48 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.45 View
H-A H-A Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JV2 | 7JV2_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JV2 H-A Y109 E484 Hydrophobic 4.43 View
7JV2 H-A Y109 E484 Hydrogen Bonds 3.77 View
7JV2_africa_mut H-A V2 V483 Hydrophobic 4.20 View
7JV2_africa_mut H-A S100 G485 Hydrogen Bonds 3.68 View
7JV2_africa_mut H-A Y102 F486 Hydrophobic 4.03 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph