VTR

12 main matches found (27 matches in total )

Execution time: 11.0 seconds

Match RMSD = 1.06

VTR = 0.1

Average AVD = 0.96 Å

Parameters

Chains(7JMW.pdb ): A versus H

Chains(7JMW_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JMW 622 19 0 14 0 0 0 33
B7JMW_africa_mut 622 29 1 16 0 0 0 46

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H P412 Y32 P412 Y32 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-H A-H Q414 Q101 Q414 Q101 Hydrogen Bonds Hydrogen Bonds 1.8 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 0.34 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 0.6 View
A-H A-H D427 R97 D427 R97 Hydrogen Bonds Hydrogen Bonds 0.95 View
A-H A-H Y380 R97 Y380 R97 Hydrophobic Hydrophobic 1.49 View
A-H A-H D427 T28 D427 T28 Hydrophobic Hydrophobic 0.54 View
A-H A-H G413 Y32 G413 Y32 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-H A-H D428 S31 D428 S31 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 0.88 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.0 View
A-H A-H P412 R97 P412 R97 Hydrophobic Hydrophobic 0.96 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 0.91 View
A-H A-H D427 R97 D427 R97 Hydrogen Bonds Hydrogen Bonds 0.7 View
A-H A-H F429 R97 F429 R97 Hydrogen Bonds Hydrogen Bonds 0.82 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.66 View
A-H A-H Y380 Y99 Y380 Y99 Hydrophobic Hydrophobic 1.65 View
A-H A-H D427 T28 D427 T28 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-H A-H F429 R97 F429 R97 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-H A-H D427 Y32 D427 Y32 Hydrogen Bonds Hydrogen Bonds 0.79 View
A-H A-H D427 Y32 D427 Y32 Hydrophobic Hydrophobic 0.63 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.43 View
A-H A-H K378 Y99 K378 Y99 Hydrophobic Hydrophobic 1.09 View
A-H A-H Y380 Y99 Y380 Y99 Hydrophobic Hydrophobic 1.61 View
A-H A-H Q414 Q101 Q414 Q101 Hydrogen Bonds Hydrogen Bonds 1.44 View
A-H A-H Y380 R97 Y380 R97 Hydrophobic Hydrophobic 1.52 View
A-H A-H D427 S31 D427 S31 Hydrogen Bonds Hydrogen Bonds 0.42 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JMW | 7JMW_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JMW A-H K378 Y99 Hydrophobic 3.63 View
7JMW A-H K378 Y99 Hydrophobic 4.34 View
7JMW A-H K378 Y99 Hydrophobic 4.34 View
7JMW A-H C379 Y100 Hydrogen Bonds 2.90 View
7JMW A-H C379 Y100 Hydrogen Bonds 2.57 View
7JMW A-H C379 Y100 Hydrophobic 4.09 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 3.73 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 3.19 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 3.46 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 3.40 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 4.11 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 3.31 View
7JMW_africa_mut A-H K378 Y99 Hydrophobic 2.96 View
7JMW_africa_mut A-H C379 Y99 Hydrogen Bonds 2.98 View
7JMW_africa_mut A-H Y380 R97 Hydrophobic 4.38 View
7JMW_africa_mut A-H Y380 Y99 Hydrophobic 4.23 View
7JMW_africa_mut A-H Y380 Y99 Hydrophobic 4.10 View
7JMW_africa_mut A-H Y380 Y99 Hydrophobic 3.91 View
7JMW_africa_mut A-H Y380 Y99 Hydrophobic 3.63 View
7JMW_africa_mut A-H Y380 Y99 Hydrophobic 3.41 View
7JMW_africa_mut A-H P412 R97 Hydrophobic 4.16 View
7JMW_africa_mut A-H G413 H102 Hydrogen Bonds 3.73 View
7JMW_africa_mut A-H D427 T28 Hydrogen Bonds 3.73 View
7JMW_africa_mut A-H D428 R97 Attractive 5.85 View
7JMW_africa_mut A-H D428 R97 Hydrogen Bonds 2.77 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph