VTR

21 main matches found (45 matches in total )

Execution time: 12.0 seconds

Match RMSD = 0.48

VTR = 0.01

Average AVD = 0.42 Å

Parameters

Chains(7JMO.pdb ): A versus H

Chains(7JMO_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JMO 616 25 3 22 0 0 0 50
B7JMO_africa_mut 616 27 0 24 0 0 0 51

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H L455 A99 L455 A99 Hydrophobic Hydrophobic 0.97 View
A-H A-H F456 A99 F456 A99 Hydrophobic Hydrophobic 0.88 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.24 View
A-H A-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.6 View
A-H A-H N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-H A-H Y489 A99 Y489 A99 Hydrophobic Hydrophobic 0.9 View
A-H A-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.83 View
A-H A-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-H A-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.25 View
A-H A-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.16 View
A-H A-H Y453 E97 Y453 E97 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-H A-H S494 R98 S494 R98 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-H A-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-H A-H Y453 E97 Y453 E97 Hydrogen Bonds Hydrogen Bonds 0.34 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.24 View
A-H A-H K417 Y52 N417 Y52 Hydrophobic Hydrophobic 1.23 View
A-H A-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.34 View
A-H A-H N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-H A-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.33 View
A-H A-H L455 E97 L455 E97 Hydrophobic Hydrophobic 0.39 View
A-H A-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-H A-H A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.78 View
A-H A-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-H A-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-H A-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.31 View
A-H A-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.27 View
A-H A-H F456 L96 F456 L96 Hydrophobic Hydrophobic 0.28 View
A-H A-H Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.11 View
A-H A-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.18 View
A-H A-H Q493 R98 Q493 R98 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-H A-H Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.27 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.25 View
A-H A-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-H A-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-H A-H L455 E97 L455 E97 Hydrophobic Hydrophobic 0.37 View
A-H A-H F456 A99 F456 A99 Hydrophobic Hydrophobic 0.84 View
A-H A-H L455 E97 L455 E97 Hydrophobic Hydrophobic 0.29 View
A-H A-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.3 View
A-H A-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.22 View
A-H A-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.67 View
A-H A-H F456 L96 F456 L96 Hydrophobic Hydrophobic 0.32 View
A-H A-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.29 View
A-H A-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-H A-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.39 View
A-H A-H Q493 R98 Q493 R98 Hydrophobic Hydrophobic 0.5 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JMO | 7JMO_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JMO A-H K417 Y33 Hydrophobic 4.36 View
7JMO A-H K417 D95 Attractive 5.06 View
7JMO A-H K417 E97 Attractive, Hydrogen Bonds 3.20 View
7JMO A-H K417 E97 Attractive 4.90 View
7JMO_africa_mut A-H N417 Y33 Hydrogen Bonds 2.67 View
7JMO_africa_mut A-H Y421 Y52 Hydrophobic 4.49 View
7JMO_africa_mut A-H K458 S53 Hydrogen Bonds 3.65 View
7JMO_africa_mut A-H A475 S31 Hydrogen Bonds 3.72 View
7JMO_africa_mut A-H Y489 A99 Hydrophobic 4.44 View
7JMO_africa_mut A-H Y489 A99 Hydrophobic 4.11 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph