VTR

10 main matches found (13 matches in total )

Execution time: 4.0 seconds

Match RMSD = 0.42

VTR = 0.0

Average AVD = 0.4 Å

Parameters

Chains(7DX4.pdb ): E versus L

Chains(7DX4_africa_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7DX4 1027 3 0 10 0 0 0 13
B7DX4_africa_mut 1027 3 0 10 0 0 0 13

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-L E-L R357 A31 R357 A31 Hydrophobic Hydrophobic 0.46 View
E-L E-L R357 S26 R357 S26 Hydrogen Bonds Hydrogen Bonds 0.24 View
E-L E-L R357 S26 R357 S26 Hydrogen Bonds Hydrogen Bonds 0.4 View
E-L E-L R355 S95 R355 S95 Hydrogen Bonds Hydrogen Bonds 0.17 View
E-L E-L N354 S95 N354 S95 Hydrogen Bonds Hydrogen Bonds 0.65 View
E-L E-L R355 Y33 R355 Y33 Hydrogen Bonds Hydrogen Bonds 0.33 View
E-L E-L R357 T71 R357 T71 Hydrogen Bonds Hydrogen Bonds 0.55 View
E-L E-L N354 Y33 N354 Y33 Hydrogen Bonds Hydrogen Bonds 0.57 View
E-L E-L R357 G30 R357 G30 Hydrogen Bonds Hydrogen Bonds 0.29 View
E-L E-L R466 Y33 R466 Y33 Hydrogen Bonds Hydrogen Bonds 0.4 View
E-L E-L R355 A31 R355 A31 Hydrophobic Hydrophobic 0.49 View
E-L E-L W353 Y33 W353 Y33 Hydrogen Bonds Hydrogen Bonds 0.35 View
E-L E-L R355 Y33 R355 Y33 Hydrophobic Hydrophobic 0.31 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7DX4 | 7DX4_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph