VTR

9 main matches found (27 matches in total )

Execution time: 5.0 seconds

Match RMSD = 0.44

VTR = 0.0

Average AVD = 0.43 Å

Parameters

Chains(7DX4.pdb ): E versus H

Chains(7DX4_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7DX4 1027 18 0 9 0 0 0 27
B7DX4_africa_mut 1027 20 0 10 0 0 0 30

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-H E-H E465 Y106 E465 Y106 Hydrophobic Hydrophobic 0.53 View
E-H E-H E465 Y106 E465 Y106 Hydrophobic Hydrophobic 0.51 View
E-H E-H R457 S104 R457 S104 Hydrogen Bonds Hydrogen Bonds 0.3 View
E-H E-H F490 I56 F490 I56 Hydrophobic Hydrophobic 0.5 View
E-H E-H F490 I55 F490 I55 Hydrophobic Hydrophobic 0.42 View
E-H E-H P463 Y106 P463 Y106 Hydrogen Bonds Hydrogen Bonds 0.44 View
E-H E-H R466 G107 R466 G107 Hydrogen Bonds Hydrogen Bonds 0.52 View
E-H E-H R466 G105 R466 G105 Hydrogen Bonds Hydrogen Bonds 0.23 View
E-H E-H F490 I53 F490 I53 Hydrophobic Hydrophobic 0.45 View
E-H E-H F490 I56 F490 I56 Hydrophobic Hydrophobic 0.45 View
E-H E-H T470 I53 T470 I53 Hydrophobic Hydrophobic 0.43 View
E-H E-H S469 G102 S469 G102 Hydrogen Bonds Hydrogen Bonds 0.25 View
E-H E-H F490 I55 F490 I55 Hydrophobic Hydrophobic 0.28 View
E-H E-H E465 G105 E465 G105 Hydrogen Bonds Hydrogen Bonds 0.27 View
E-H E-H L452 I56 L452 I56 Hydrophobic Hydrophobic 0.6 View
E-H E-H T470 I53 T470 I53 Hydrophobic Hydrophobic 0.54 View
E-H E-H F490 I55 F490 I55 Hydrophobic Hydrophobic 0.3 View
E-H E-H T470 S32 T470 S32 Hydrogen Bonds Hydrogen Bonds 0.53 View
E-H E-H F490 I55 F490 I55 Hydrophobic Hydrophobic 0.42 View
E-H E-H F490 I56 F490 I56 Hydrophobic Hydrophobic 0.47 View
E-H E-H I468 A108 I468 A108 Hydrophobic Hydrophobic 0.7 View
E-H E-H L452 I53 L452 I53 Hydrophobic Hydrophobic 0.47 View
E-H E-H F490 I55 F490 I55 Hydrophobic Hydrophobic 0.33 View
E-H E-H R466 G105 R466 G105 Hydrogen Bonds Hydrogen Bonds 0.17 View
E-H E-H F490 I56 F490 I56 Hydrophobic Hydrophobic 0.46 View
E-H E-H F490 I55 F490 I55 Hydrophobic Hydrophobic 0.47 View
E-H E-H T470 S32 T470 S32 Hydrogen Bonds Hydrogen Bonds 0.45 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7DX4 | 7DX4_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7DX4_africa_mut E-H L452 I56 Hydrophobic 3.60 View
7DX4_africa_mut E-H F464 Y106 Hydrophobic 4.25 View
7DX4_africa_mut E-H G482 T29 Hydrogen Bonds 3.11 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph