Execution time: 10.0 seconds
Match RMSD = 0.37
VTR = 0.01
Average AVD = 0.35 Å
Chains(7DPM.pdb ): L versus J
Chains(7DPM_africa_mut.pdb ) L versus J
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7DPM | 2531 | 17 | 1 | 16 | 0 | 0 | 1 | 35 |
B7DPM_africa_mut | 2531 | 22 | 1 | 18 | 0 | 0 | 1 | 42 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
J-L | J-L | Y107 | Y369 | Y107 | Y369 | Hydrophobic | Hydrophobic | 0.25 | View |
J-L | J-L | Y108 | V407 | Y108 | V407 | Hydrophobic | Hydrophobic | 0.27 | View |
J-L | J-L | E111 | Y508 | E111 | Y508 | Hydrogen Bonds | Hydrogen Bonds | 0.4 | View |
J-L | J-L | Y107 | F377 | Y107 | F377 | Hydrogen Bonds | Hydrogen Bonds | 0.32 | View |
J-L | J-L | R110 | A372 | R110 | A372 | Hydrogen Bonds | Hydrogen Bonds | 0.5 | View |
J-L | J-L | Y107 | F377 | Y107 | F377 | Hydrophobic | Hydrophobic | 0.31 | View |
J-L | J-L | E111 | S375 | E111 | S375 | Hydrogen Bonds | Hydrogen Bonds | 0.46 | View |
J-L | J-L | Y107 | Y369 | Y107 | Y369 | Hydrophobic | Hydrophobic | 0.3 | View |
J-L | J-L | Y101 | K378 | Y101 | K378 | Hydrogen Bonds | Hydrogen Bonds | 0.66 | View |
J-L | J-L | Y107 | F377 | Y107 | F377 | Hydrophobic | Hydrophobic | 0.3 | View |
J-L | J-L | Y107 | Y369 | Y107 | Y369 | Hydrophobic | Hydrophobic | 0.33 | View |
J-L | J-L | F109 | S375 | F109 | S375 | Hydrogen Bonds | Hydrogen Bonds | 0.28 | View |
J-L | J-L | R110 | F374 | R110 | F374 | Hydrogen Bonds | Hydrogen Bonds | 0.19 | View |
J-L | J-L | Y107 | Y369 | Y107 | Y369 | Hydrogen Bonds | Hydrogen Bonds | 0.36 | View |
J-L | J-L | D103 | K378 | D103 | K378 | Attractive | Attractive | 0.7 | View |
J-L | J-L | Y107 | F377 | Y107 | F377 | Hydrogen Bonds | Hydrogen Bonds | 0.48 | View |
J-L | J-L | R110 | S375 | R110 | S375 | Hydrogen Bonds | Hydrogen Bonds | 0.19 | View |
J-L | J-L | Y108 | V407 | Y108 | V407 | Hydrophobic | Hydrophobic | 0.3 | View |
J-L | J-L | Y101 | K378 | Y101 | K378 | Hydrophobic | Hydrophobic | 0.36 | View |
J-L | J-L | Y107 | Y369 | Y107 | Y369 | Aromatic Stacking | Aromatic Stacking | 0.26 | View |
J-L | J-L | E111 | Y508 | E111 | Y508 | Hydrogen Bonds | Hydrogen Bonds | 0.33 | View |
J-L | J-L | Y108 | K378 | Y108 | K378 | Hydrophobic | Hydrophobic | 0.4 | View |
J-L | J-L | Y107 | F377 | Y107 | F377 | Hydrophobic | Hydrophobic | 0.3 | View |
J-L | J-L | S105 | C379 | S105 | C379 | Hydrogen Bonds | Hydrogen Bonds | 0.29 | View |
J-L | J-L | Y102 | Y369 | Y102 | Y369 | Hydrogen Bonds | Hydrogen Bonds | 0.5 | View |
J-L | J-L | Y108 | T376 | Y108 | T376 | Hydrogen Bonds | Hydrogen Bonds | 0.15 | View |
J-L | J-L | Y108 | T376 | Y108 | T376 | Hydrogen Bonds | Hydrogen Bonds | 0.21 | View |
J-L | J-L | F109 | V503 | F109 | V503 | Hydrophobic | Hydrophobic | 0.59 | View |
J-L | J-L | R110 | F374 | R110 | F374 | Hydrogen Bonds | Hydrogen Bonds | 0.33 | View |
J-L | J-L | Y101 | K378 | Y101 | K378 | Hydrophobic | Hydrophobic | 0.32 | View |
J-L | J-L | Y108 | T376 | Y108 | T376 | Hydrophobic | Hydrophobic | 0.25 | View |
J-L | J-L | Y108 | V407 | Y108 | V407 | Hydrophobic | Hydrophobic | 0.25 | View |
J-L | J-L | Y108 | T376 | Y108 | T376 | Hydrophobic | Hydrophobic | 0.23 | View |
J-L | J-L | F109 | V503 | F109 | V503 | Hydrophobic | Hydrophobic | 0.44 | View |
J-L | J-L | Y107 | F377 | Y107 | F377 | Hydrophobic | Hydrophobic | 0.27 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7DPM_africa_mut | J-L | Y107 | F374 | Hydrogen Bonds | 3.81 | View |
7DPM_africa_mut | J-L | Y107 | F377 | Hydrophobic | 4.41 | View |
7DPM_africa_mut | J-L | Y108 | K378 | Hydrophobic | 4.46 | View |
7DPM_africa_mut | J-L | Y108 | R408 | Hydrophobic | 4.39 | View |
7DPM_africa_mut | J-L | F109 | V503 | Hydrophobic | 4.20 | View |
7DPM_africa_mut | J-L | F109 | V503 | Hydrophobic | 4.36 | View |
7DPM_africa_mut | J-L | R110 | F374 | Hydrogen Bonds | 3.84 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |