VTR

26 main matches found (40 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.42

VTR = 0.01

Average AVD = 0.38 Å

Parameters

Chains(7DPM.pdb ): F versus H

Chains(7DPM_africa_mut.pdb ) F versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7DPM 2531 14 7 14 0 5 0 40
B7DPM_africa_mut 2531 15 7 17 0 5 0 44

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
F-H F-H E465 L154 E465 L154 Hydrophobic Hydrophobic 0.52 View
F-H F-H E465 S156 E465 S156 Hydrogen Bonds Hydrogen Bonds 0.3 View
F-H F-H R357 D151 R357 D151 Attractive Attractive 0.3 View
F-H F-H Y396 D151 Y396 D151 Hydrophobic Hydrophobic 0.16 View
F-H F-H E465 L154 E465 L154 Hydrophobic Hydrophobic 0.3 View
F-H F-H Y396 N152 Y396 N152 Hydrophobic Hydrophobic 0.2 View
F-H F-H E465 L154 E465 L154 Hydrophobic Hydrophobic 0.34 View
F-H F-H I468 N158 I468 N158 Hydrophobic Hydrophobic 0.5 View
F-H F-H R466 S156 R466 S156 Hydrogen Bonds Hydrogen Bonds 0.25 View
F-H F-H F464 L154 F464 L154 Hydrogen Bonds Hydrogen Bonds 0.17 View
F-H F-H R466 L154 R466 L154 Hydrogen Bonds Hydrogen Bonds 0.26 View
F-H F-H D467 S156 D467 S156 Hydrogen Bonds Hydrogen Bonds 0.46 View
F-H F-H R357 K190 R357 K190 Repulsive Repulsive 0.27 View
F-H F-H E516 N152 E516 N152 Hydrogen Bonds Hydrogen Bonds 0.22 View
F-H F-H S477 Q3 S477 Q3 Hydrogen Bonds Hydrogen Bonds 0.64 View
F-H F-H R357 K190 R357 K190 Repulsive Repulsive 0.33 View
F-H F-H R466 D185 R466 D185 Attractive Attractive 0.59 View
F-H F-H N354 K188 N354 K188 Hydrogen Bonds Hydrogen Bonds 0.82 View
F-H F-H R466 D185 R466 D185 Attractive Attractive 0.65 View
F-H F-H W353 A153 W353 A153 Hydrophobic Hydrophobic 0.23 View
F-H F-H R355 D151 R355 D151 Hydrogen Bonds Hydrogen Bonds 0.1 View
F-H F-H K462 L154 K462 L154 Hydrophobic Hydrophobic 0.57 View
F-H F-H R466 Q155 R466 Q155 Hydrogen Bonds Hydrogen Bonds 0.33 View
F-H F-H K462 Q147 K462 Q147 Hydrogen Bonds Hydrogen Bonds 0.48 View
F-H F-H I468 S156 I468 S156 Hydrogen Bonds Hydrogen Bonds 0.15 View
F-H F-H K462 K145 K462 K145 Repulsive Repulsive 0.53 View
F-H F-H R357 D151 R357 D151 Attractive Attractive 0.24 View
F-H F-H R357 D151 R357 D151 Attractive Attractive 0.3 View
F-H F-H E465 L154 E465 L154 Hydrophobic Hydrophobic 0.2 View
F-H F-H D467 S156 D467 S156 Hydrogen Bonds Hydrogen Bonds 0.42 View
F-H F-H E465 L154 E465 L154 Hydrophobic Hydrophobic 0.24 View
F-H F-H I468 N158 I468 N158 Hydrophobic Hydrophobic 0.77 View
F-H F-H R466 D185 R466 D185 Attractive Attractive 0.66 View
F-H F-H R357 D151 R357 D151 Attractive Attractive 0.3 View
F-H F-H E465 L154 E465 L154 Hydrophobic Hydrophobic 0.48 View
F-H F-H R355 H189 R355 H189 Hydrogen Bonds Hydrogen Bonds 0.32 View
F-H F-H R357 K190 R357 K190 Repulsive Repulsive 0.43 View
F-H F-H R357 K190 R357 K190 Repulsive Repulsive 0.33 View
F-H F-H K462 L154 K462 L154 Hydrophobic Hydrophobic 0.52 View
F-H F-H R355 D151 R355 D151 Hydrophobic Hydrophobic 0.27 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7DPM | 7DPM_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7DPM_africa_mut F-H R355 N152 Hydrogen Bonds 3.51 View
7DPM_africa_mut F-H Y396 D151 Hydrophobic 4.49 View
7DPM_africa_mut F-H R466 Q155 Hydrogen Bonds 3.63 View
7DPM_africa_mut F-H D467 G157 Hydrogen Bonds 3.86 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph