VTR

2 main matches found (21 matches in total )

Execution time: 31.0 seconds

Match RMSD = 0.58

VTR = 0.03

Average AVD = 0.56 Å

Parameters

Chains(7D0D.pdb ): B versus G

Chains(7D0D_africa_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7D0D 3468 19 0 4 0 2 1 26
B7D0D_africa_mut 3459 22 0 1 0 0 1 24

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
G-B G-B Y54 F486 Y54 F486 Hydrophobic Hydrophobic 0.52 View
G-B G-B Y54 F486 Y54 F486 Hydrophobic Hydrophobic 0.56 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.51 View
G-B G-B R60 F486 R60 F486 Hydrophobic Hydrophobic 0.51 View
G-B G-B R60 F486 R60 F486 Hydrophobic Hydrophobic 0.43 View
G-B G-B Y54 F486 Y54 F486 Aromatic Stacking Aromatic Stacking 0.47 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.53 View
G-B G-B Y54 F486 Y54 F486 Hydrophobic Hydrophobic 0.63 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.54 View
G-B G-B T104 Y489 T104 Y489 Hydrophobic Hydrophobic 0.61 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.46 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.77 View
G-B G-B L52 F486 L52 F486 Hydrophobic Hydrophobic 0.75 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.59 View
G-B G-B T104 Y489 T104 Y489 Hydrophobic Hydrophobic 0.41 View
G-B G-B Y54 F486 Y54 F486 Hydrophobic Hydrophobic 0.45 View
G-B G-B T104 F456 T104 F456 Hydrophobic Hydrophobic 0.61 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.58 View
G-B G-B Y107 Y489 Y107 Y489 Hydrogen Bonds Hydrogen Bonds 0.63 View
G-B G-B L103 F486 L103 F486 Hydrophobic Hydrophobic 0.84 View
G-B G-B T104 Y489 T104 Y489 Hydrophobic Hydrophobic 0.44 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7D0D | 7D0D_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7D0D G-B S32 E484 Hydrogen Bonds 3.75 View
7D0D G-B S32 E484 Hydrogen Bonds 3.42 View
7D0D G-B W55 E484 Hydrogen Bonds 3.71 View
7D0D G-B D56 E484 Repulsive 5.58 View
7D0D G-B D56 E484 Repulsive 4.87 View
7D0D_africa_mut G-B L103 Y489 Hydrophobic 4.33 View
7D0D_africa_mut G-B L103 Y489 Hydrophobic 4.39 View
7D0D_africa_mut G-B T104 Y489 Hydrophobic 4.15 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph