VTR

2 main matches found (21 matches in total )

Execution time: 83.0 seconds

Match RMSD = 0.58

VTR = 0.03

Average AVD = 0.56 Å

Parameters

Chains(7D0B.pdb ): A versus H

Chains(7D0B_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7D0B 3206 19 0 4 0 2 1 26
B7D0B_africa_mut 3197 23 0 1 0 0 1 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.54 View
A-H A-H F486 Y54 F486 Y54 Hydrophobic Hydrophobic 0.59 View
A-H A-H F456 T104 F456 T104 Hydrophobic Hydrophobic 0.56 View
A-H A-H F486 Y54 F486 Y54 Hydrophobic Hydrophobic 0.53 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.6 View
A-H A-H F486 Y54 F486 Y54 Hydrophobic Hydrophobic 0.4 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.56 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.61 View
A-H A-H F486 R60 F486 R60 Hydrophobic Hydrophobic 0.6 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.55 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.83 View
A-H A-H Y489 T104 Y489 T104 Hydrophobic Hydrophobic 0.56 View
A-H A-H F486 L52 F486 L52 Hydrophobic Hydrophobic 0.7 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.62 View
A-H A-H Y489 T104 Y489 T104 Hydrophobic Hydrophobic 0.35 View
A-H A-H Y489 T104 Y489 T104 Hydrophobic Hydrophobic 0.39 View
A-H A-H F486 Y54 F486 Y54 Aromatic Stacking Aromatic Stacking 0.41 View
A-H A-H F486 L103 F486 L103 Hydrophobic Hydrophobic 0.9 View
A-H A-H Y489 Y107 Y489 Y107 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-H A-H F486 Y54 F486 Y54 Hydrophobic Hydrophobic 0.46 View
A-H A-H F486 R60 F486 R60 Hydrophobic Hydrophobic 0.54 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7D0B | 7D0B_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7D0B A-H E484 S32 Hydrogen Bonds 3.74 View
7D0B A-H E484 S32 Hydrogen Bonds 3.42 View
7D0B A-H E484 W55 Hydrogen Bonds 3.71 View
7D0B A-H E484 D56 Repulsive 5.58 View
7D0B A-H E484 D56 Repulsive 4.88 View
7D0B_africa_mut A-H Y489 L103 Hydrophobic 4.45 View
7D0B_africa_mut A-H Y489 L103 Hydrophobic 4.23 View
7D0B_africa_mut A-H Y489 L103 Hydrophobic 4.26 View
7D0B_africa_mut A-H Y489 T104 Hydrophobic 4.25 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph