VTR

1 main matches found (21 matches in total )

Execution time: 50.0 seconds

Match RMSD = 0.77

VTR = 0.01

Average AVD = 0.72 Å

Parameters

Chains(7CZW.pdb ): A versus L

Chains(7CZW_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZW 3880 20 0 0 0 0 1 21
B7CZW_africa_mut 3871 22 0 0 0 0 1 23

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.58 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.8 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.71 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.53 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.39 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.71 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.68 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.65 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 1.07 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 1.34 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 1.21 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.53 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.62 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.61 View
A-L A-L F486 P57 F486 P57 Hydrophobic Hydrophobic 0.42 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.8 View
A-L A-L F486 Y51 F486 Y51 Aromatic Stacking Aromatic Stacking 0.41 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.54 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.56 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 0.74 View
A-L A-L F486 Y51 F486 Y51 Hydrophobic Hydrophobic 1.24 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZW | 7CZW_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZW_africa_mut A-L F486 Y51 Hydrophobic 4.14 View
7CZW_africa_mut A-L F486 P57 Hydrophobic 4.39 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph