VTR

7 main matches found (12 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.73

VTR = 0.03

Average AVD = 0.71 Å

Parameters

Chains(7CZV.pdb ): C versus N

Chains(7CZV_africa_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZV 4346 5 3 5 0 1 0 14
B7CZV_africa_mut 4337 6 2 5 0 2 0 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N F486 L94 F486 L94 Hydrophobic Hydrophobic 0.6 View
C-N C-N F486 L94 F486 L94 Hydrophobic Hydrophobic 0.76 View
C-N C-N T415 Y32 T415 Y32 Hydrogen Bonds Hydrogen Bonds 0.63 View
C-N C-N R403 D50 R403 D50 Attractive Attractive 0.66 View
C-N C-N R408 D50 R408 D50 Attractive Attractive 0.77 View
C-N C-N F486 L94 F486 L94 Hydrophobic Hydrophobic 0.47 View
C-N C-N Y421 N31 Y421 N31 Hydrogen Bonds Hydrogen Bonds 0.66 View
C-N C-N K417 N31 N417 N31 Hydrophobic Hydrophobic 1.11 View
C-N C-N F486 L94 F486 L94 Hydrophobic Hydrophobic 0.75 View
C-N C-N Y489 D1 Y489 D1 Hydrogen Bonds Hydrogen Bonds 0.6 View
C-N C-N G416 Y32 G416 Y32 Hydrogen Bonds Hydrogen Bonds 0.66 View
C-N C-N D405 D50 D405 D50 Repulsive Repulsive 0.85 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZV | 7CZV_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZV C-N Q409 Y32 Hydrogen Bonds 3.83 View
7CZV C-N K417 D50 Attractive 5.27 View
7CZV_africa_mut C-N D405 D50 Repulsive 5.76 View
7CZV_africa_mut C-N T415 Y32 Hydrogen Bonds 3.86 View
7CZV_africa_mut C-N F486 L94 Hydrophobic 3.80 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph