VTR

24 main matches found (41 matches in total )

Execution time: 53.0 seconds

Match RMSD = 0.76

VTR = 0.05

Average AVD = 0.71 Å

Parameters

Chains(7CZT.pdb ): C versus M

Chains(7CZT_africa_mut.pdb ) C versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZT 3872 18 6 14 0 6 1 45
B7CZT_africa_mut 3863 30 5 18 0 7 1 61

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-M C-M D420 Y53 D420 Y53 Hydrogen Bonds Hydrogen Bonds 0.53 View
C-M C-M E406 D57 E406 D57 Repulsive Repulsive 1.04 View
C-M C-M R403 D57 R403 D57 Attractive Attractive 0.46 View
C-M C-M Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.6 View
C-M C-M T415 S56 T415 S56 Hydrogen Bonds Hydrogen Bonds 0.53 View
C-M C-M F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.58 View
C-M C-M Q414 S56 Q414 S56 Hydrogen Bonds Hydrogen Bonds 0.47 View
C-M C-M F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.37 View
C-M C-M F456 P100 F456 P100 Hydrophobic Hydrophobic 0.81 View
C-M C-M R403 D57 R403 D57 Attractive Attractive 0.86 View
C-M C-M Y421 Y53 Y421 Y53 Hydrogen Bonds Hydrogen Bonds 0.97 View
C-M C-M F456 P100 F456 P100 Hydrophobic Hydrophobic 0.77 View
C-M C-M Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.73 View
C-M C-M Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.43 View
C-M C-M F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.74 View
C-M C-M R403 Y51 R403 Y51 Hydrogen Bonds Hydrogen Bonds 1.12 View
C-M C-M F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.44 View
C-M C-M T415 D55 T415 D55 Hydrogen Bonds Hydrogen Bonds 0.75 View
C-M C-M Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.39 View
C-M C-M Q409 D57 Q409 D57 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-M C-M F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.85 View
C-M C-M S477 D27 S477 D27 Hydrogen Bonds Hydrogen Bonds 0.87 View
C-M C-M F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.59 View
C-M C-M K417 D57 N417 D57 Hydrogen Bonds Hydrogen Bonds 0.5 View
C-M C-M Q409 S56 Q409 S56 Hydrogen Bonds Hydrogen Bonds 1.0 View
C-M C-M R408 K58 R408 K58 Repulsive Repulsive 0.34 View
C-M C-M R403 D57 R403 D57 Attractive Attractive 0.47 View
C-M C-M D405 D57 D405 D57 Repulsive Repulsive 0.71 View
C-M C-M R408 K58 R408 K58 Repulsive Repulsive 1.11 View
C-M C-M Q493 N102 Q493 N102 Hydrogen Bonds Hydrogen Bonds 0.92 View
C-M C-M K417 Y53 N417 Y53 Hydrophobic Hydrophobic 1.01 View
C-M C-M F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.58 View
C-M C-M Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.69 View
C-M C-M R408 K58 R408 K58 Repulsive Repulsive 0.49 View
C-M C-M R408 S56 R408 S56 Hydrogen Bonds Hydrogen Bonds 1.69 View
C-M C-M F486 L104 F486 L104 Hydrophobic Hydrophobic 0.56 View
C-M C-M E406 D57 E406 D57 Repulsive Repulsive 0.88 View
C-M C-M Q493 W99 Q493 W99 Hydrophobic Hydrophobic 0.36 View
C-M C-M S477 D27 S477 D27 Hydrogen Bonds Hydrogen Bonds 0.95 View
C-M C-M Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.45 View
C-M C-M R408 D55 R408 D55 Attractive Attractive 0.93 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZT | 7CZT_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZT C-M K417 Y53 Hydrophobic 4.10 View
7CZT C-M K417 D57 Attractive 4.33 View
7CZT C-M K417 D57 Attractive, Hydrogen Bonds 3.80 View
7CZT_africa_mut C-M D405 D57 Repulsive 5.99 View
7CZT_africa_mut C-M R408 S56 Hydrogen Bonds 2.65 View
7CZT_africa_mut C-M R408 S56 Hydrogen Bonds 2.76 View
7CZT_africa_mut C-M R408 D57 Attractive 5.27 View
7CZT_africa_mut C-M R408 K58 Hydrogen Bonds 3.20 View
7CZT_africa_mut C-M Q409 D57 Hydrogen Bonds 3.50 View
7CZT_africa_mut C-M F456 Y33 Hydrophobic 4.37 View
7CZT_africa_mut C-M F456 Y33 Hydrophobic 3.81 View
7CZT_africa_mut C-M F456 Y33 Hydrophobic 3.85 View
7CZT_africa_mut C-M A475 I28 Hydrophobic 4.47 View
7CZT_africa_mut C-M G476 D27 Hydrogen Bonds 3.86 View
7CZT_africa_mut C-M F486 Q1 Hydrophobic 4.48 View
7CZT_africa_mut C-M F486 Q1 Hydrophobic 3.15 View
7CZT_africa_mut C-M F486 Q1 Hydrophobic 4.14 View
7CZT_africa_mut C-M F486 L104 Hydrophobic 3.87 View
7CZT_africa_mut C-M Y489 Y33 Hydrophobic 4.33 View
7CZT_africa_mut C-M Y489 P100 Hydrophobic 3.84 View
7CZT_africa_mut C-M Y489 L104 Hydrophobic 4.46 View
7CZT_africa_mut C-M Y489 L104 Hydrophobic 3.88 View
7CZT_africa_mut C-M Q493 W99 Hydrophobic 4.35 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph