VTR

30 main matches found (44 matches in total )

Execution time: 50.0 seconds

Match RMSD = 0.66

VTR = 0.01

Average AVD = 0.58 Å

Parameters

Chains(7CZQ.pdb ): C versus J

Chains(7CZQ_africa_mut.pdb ) C versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZQ 3868 17 0 28 0 0 1 46
B7CZQ_africa_mut 3859 17 0 31 0 0 1 49

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-J C-J S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.5 View
C-J C-J Y473 S53 Y473 S53 Hydrogen Bonds Hydrogen Bonds 0.58 View
C-J C-J Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.54 View
C-J C-J T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-J C-J N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.45 View
C-J C-J N487 F27 N487 F27 Hydrophobic Hydrophobic 0.27 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.53 View
C-J C-J D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.38 View
C-J C-J T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.5 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 1.32 View
C-J C-J D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.28 View
C-J C-J A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-J C-J L455 T106 L455 T106 Hydrophobic Hydrophobic 0.59 View
C-J C-J S494 T104 S494 T104 Hydrogen Bonds Hydrogen Bonds 0.49 View
C-J C-J N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.48 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.54 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 1.32 View
C-J C-J F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.54 View
C-J C-J K417 Y33 N417 Y33 Hydrophobic Hydrogen Bonds 1.91 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.48 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.6 View
C-J C-J L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.64 View
C-J C-J S494 I103 S494 I103 Hydrogen Bonds Hydrogen Bonds 0.61 View
C-J C-J Y449 T104 Y449 T104 Hydrophobic Hydrophobic 0.84 View
C-J C-J Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.41 View
C-J C-J Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.66 View
C-J C-J Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.33 View
C-J C-J S494 I103 S494 I103 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-J C-J A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.38 View
C-J C-J A475 S31 A475 S31 Hydrogen Bonds Hydrogen Bonds 0.43 View
C-J C-J R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.45 View
C-J C-J Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.27 View
C-J C-J Y421 Y33 Y421 Y33 Hydrogen Bonds Hydrogen Bonds 0.61 View
C-J C-J Y449 I103 Y449 I103 Hydrophobic Hydrophobic 0.8 View
C-J C-J G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.53 View
C-J C-J Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.5 View
C-J C-J N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-J C-J A475 S31 A475 S31 Hydrogen Bonds Hydrogen Bonds 0.4 View
C-J C-J F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.48 View
C-J C-J G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-J C-J F456 P100 F456 P100 Hydrophobic Hydrophobic 1.08 View
C-J C-J G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.51 View
C-J C-J A475 N32 A475 N32 Hydrophobic Hydrophobic 0.21 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZQ | 7CZQ_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZQ C-J K417 Y33 Hydrophobic 4.47 View
7CZQ C-J Y449 T104 Hydrophobic 4.36 View
7CZQ_africa_mut C-J L455 P100 Hydrophobic 4.13 View
7CZQ_africa_mut C-J L455 P100 Hydrophobic 3.24 View
7CZQ_africa_mut C-J F456 P100 Hydrophobic 3.75 View
7CZQ_africa_mut C-J A475 N32 Hydrogen Bonds 3.86 View
7CZQ_africa_mut C-J Q493 G105 Hydrogen Bonds 3.51 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph