VTR

15 main matches found (38 matches in total )

Execution time: 42.0 seconds

Match RMSD = 0.98

VTR = 0.07

Average AVD = 0.9 Å

Parameters

Chains(7CZP.pdb ): A versus L

Chains(7CZP_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZP 3862 23 2 16 0 0 1 42
B7CZP_africa_mut 3853 35 0 22 0 0 3 60

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 1.85 View
A-L A-L N487 R56 N487 R56 Hydrogen Bonds Hydrogen Bonds 0.96 View
A-L A-L F486 T76 F486 T76 Hydrophobic Hydrophobic 0.39 View
A-L A-L N501 Y32 Q498 Y32 Hydrogen Bonds Hydrogen Bonds 1.81 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 1.48 View
A-L A-L Y449 G30 Y449 G30 Hydrogen Bonds Hydrogen Bonds 0.78 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.36 View
A-L A-L T500 N96 T500 N96 Hydrogen Bonds Hydrogen Bonds 1.03 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.79 View
A-L A-L Q498 S95 Q498 S95 Hydrogen Bonds Hydrogen Bonds 0.53 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.58 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 0.7 View
A-L A-L R403 Y34 R403 Y34 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 1.08 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 0.96 View
A-L A-L N501 Y32 Q498 Y32 Hydrogen Bonds Hydrogen Bonds 1.93 View
A-L A-L S494 N33 S494 N33 Hydrogen Bonds Hydrogen Bonds 1.0 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.51 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.43 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.83 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 1.36 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 1.11 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 0.94 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 0.76 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 1.21 View
A-L A-L F456 K55 F456 K55 Hydrophobic Hydrophobic 1.02 View
A-L A-L F486 T76 F486 T76 Hydrophobic Hydrophobic 0.46 View
A-L A-L Q493 N33 Q493 N33 Hydrogen Bonds Hydrogen Bonds 0.68 View
A-L A-L Q493 N33 Q493 N33 Hydrophobic Hydrophobic 0.33 View
A-L A-L L455 D52 L455 D52 Hydrophobic Hydrophobic 0.64 View
A-L A-L Y505 Y93 Y505 Y93 Hydrophobic Hydrophobic 0.86 View
A-L A-L G502 N97 G502 N97 Hydrogen Bonds Hydrogen Bonds 1.34 View
A-L A-L Q493 N33 Q493 N33 Hydrogen Bonds Hydrogen Bonds 0.85 View
A-L A-L T500 N96 T500 N96 Hydrogen Bonds Hydrogen Bonds 0.76 View
A-L A-L N487 R56 N487 R56 Hydrogen Bonds Hydrogen Bonds 1.07 View
A-L A-L F486 T76 F486 T76 Hydrophobic Hydrophobic 0.63 View
A-L A-L Y505 Y93 Y505 Y93 Aromatic Stacking Hydrophobic 0.83 View
A-L A-L Y449 G31 Y449 G31 Hydrogen Bonds Hydrogen Bonds 0.84 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZP | 7CZP_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZP A-L K417 D52 Attractive 5.75 View
7CZP A-L K417 D52 Attractive 4.13 View
7CZP A-L Y449 G31 Hydrogen Bonds 3.81 View
7CZP A-L G502 Y93 Hydrogen Bonds 3.80 View
7CZP_africa_mut A-L Y453 N33 Hydrogen Bonds 3.38 View
7CZP_africa_mut A-L N487 N62 Hydrogen Bonds 3.73 View
7CZP_africa_mut A-L Y489 R56 Hydrogen Bonds 3.51 View
7CZP_africa_mut A-L G496 Y32 Hydrogen Bonds 3.58 View
7CZP_africa_mut A-L Q498 Y32 Hydrogen Bonds 3.87 View
7CZP_africa_mut A-L Q498 Y32 Hydrogen Bonds 3.75 View
7CZP_africa_mut A-L Y501 Y93 Aromatic Stacking 4.92 View
7CZP_africa_mut A-L Y501 Y93 Hydrophobic 4.16 View
7CZP_africa_mut A-L Y501 Y93 Hydrophobic 3.32 View
7CZP_africa_mut A-L Y501 Y93 Hydrophobic 4.28 View
7CZP_africa_mut A-L Y501 Y93 Hydrophobic 3.15 View
7CZP_africa_mut A-L Y501 N97 Hydrophobic 3.78 View
7CZP_africa_mut A-L Y501 N97 Hydrophobic 3.33 View
7CZP_africa_mut A-L Y501 N97 Hydrogen Bonds 2.58 View
7CZP_africa_mut A-L Y501 N97 Hydrogen Bonds 3.42 View
7CZP_africa_mut A-L Y505 Y34 Aromatic Stacking 5.17 View
7CZP_africa_mut A-L Y505 Y34 Hydrophobic 4.07 View
7CZP_africa_mut A-L Y505 Y93 Aromatic Stacking 4.31 View
7CZP_africa_mut A-L Y505 Y93 Hydrophobic 4.31 View
7CZP_africa_mut A-L Y505 Y93 Hydrophobic 4.01 View
7CZP_africa_mut A-L Y505 Y93 Hydrophobic 4.37 View
7CZP_africa_mut A-L Y505 Y93 Hydrophobic 4.20 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph