VTR

6 main matches found (23 matches in total )

Execution time: 29.0 seconds

Match RMSD = 0.86

VTR = 0.09

Average AVD = 0.78 Å

Parameters

Chains(7CWN.pdb ): C versus N

Chains(7CWN_africa_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CWN 4583 17 0 5 0 0 1 23
B7CWN_africa_mut 4574 36 0 7 0 0 2 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 0.62 View
C-N C-N A372 W93 A372 W93 Hydrophobic Hydrophobic 0.57 View
C-N C-N A372 W93 A372 W93 Hydrophobic Hydrophobic 0.65 View
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 1.48 View
C-N C-N F377 W93 F377 W93 Hydrophobic Hydrophobic 0.9 View
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 1.44 View
C-N C-N F377 W93 F377 W93 Hydrophobic Hydrophobic 0.69 View
C-N C-N F377 W93 F377 W93 Hydrophobic Hydrophobic 1.25 View
C-N C-N F374 W93 F374 W93 Hydrogen Bonds Hydrogen Bonds 0.2 View
C-N C-N F377 W93 F377 W93 Hydrophobic Hydrophobic 1.09 View
C-N C-N A372 P94 A372 P94 Hydrophobic Hydrophobic 0.55 View
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 0.95 View
C-N C-N S373 F92 S373 F92 Hydrogen Bonds Hydrogen Bonds 0.43 View
C-N C-N A372 F92 A372 F92 Hydrogen Bonds Hydrogen Bonds 0.39 View
C-N C-N A372 W93 A372 W93 Hydrogen Bonds Hydrogen Bonds 0.43 View
C-N C-N Y369 W93 Y369 W93 Hydrogen Bonds Hydrogen Bonds 0.99 View
C-N C-N F377 W93 F377 W93 Hydrophobic Hydrophobic 1.21 View
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 0.38 View
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 1.42 View
C-N C-N Y369 W93 Y369 W93 Hydrophobic Hydrophobic 0.4 View
C-N C-N F374 W93 F374 W93 Hydrophobic Hydrophobic 0.35 View
C-N C-N F377 W93 F377 W93 Aromatic Stacking Aromatic Stacking 0.85 View
C-N C-N A372 W93 A372 W93 Hydrophobic Hydrophobic 0.64 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CWN | 7CWN_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CWN_africa_mut C-N Y369 W93 Hydrophobic 4.44 View
7CWN_africa_mut C-N Y369 W93 Aromatic Stacking 5.84 View
7CWN_africa_mut C-N Y369 W93 Hydrophobic 4.19 View
7CWN_africa_mut C-N Y369 W93 Hydrophobic 4.20 View
7CWN_africa_mut C-N Y369 W93 Hydrophobic 3.61 View
7CWN_africa_mut C-N A372 I2 Hydrophobic 4.17 View
7CWN_africa_mut C-N S373 F92 Hydrogen Bonds 3.84 View
7CWN_africa_mut C-N F374 F92 Hydrogen Bonds 3.81 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.43 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.18 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 4.42 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.75 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.08 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 4.03 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 4.07 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 2.99 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.54 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 4.42 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.92 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.77 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 3.91 View
7CWN_africa_mut C-N F377 W93 Hydrophobic 4.48 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph