VTR

13 main matches found (29 matches in total )

Execution time: 32.0 seconds

Match RMSD = 0.49

VTR = 0.04

Average AVD = 0.45 Å

Parameters

Chains(7CWN.pdb ): A versus O

Chains(7CWN_africa_mut.pdb ) A versus O

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CWN 4583 16 0 15 0 0 0 31
B7CWN_africa_mut 4574 23 7 19 0 3 0 52

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-O A-O F377 S59 F377 S59 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-O A-O Y508 P103 Y508 P103 Hydrophobic Hydrophobic 0.49 View
A-O A-O Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.39 View
A-O A-O Y380 G56 Y380 G56 Hydrogen Bonds Hydrogen Bonds 0.34 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.79 View
A-O A-O Y508 P103 Y508 P103 Hydrophobic Hydrophobic 0.53 View
A-O A-O F377 Y50 F377 Y50 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-O A-O R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.75 View
A-O A-O T376 Y105 T376 Y105 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-O A-O T385 L62 T385 L62 Hydrophobic Hydrophobic 0.57 View
A-O A-O S383 T69 S383 T69 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-O A-O P384 D60 P384 D60 Hydrophobic Hydrophobic 0.27 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.38 View
A-O A-O P412 N55 P412 N55 Hydrogen Bonds Hydrogen Bonds 0.66 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.35 View
A-O A-O S375 Y50 S375 Y50 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-O A-O C379 T58 C379 T58 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-O A-O F377 Y50 F377 Y50 Hydrogen Bonds Hydrogen Bonds 0.45 View
A-O A-O K378 Y33 K378 Y33 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-O A-O T385 D60 T385 D60 Hydrophobic Hydrophobic 0.26 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.68 View
A-O A-O K386 A67 K386 A67 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-O A-O Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.37 View
A-O A-O K386 T69 K386 T69 Hydrogen Bonds Hydrogen Bonds 0.34 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.8 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.32 View
A-O A-O Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.72 View
A-O A-O R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.68 View
A-O A-O Y380 N55 Y380 N55 Hydrogen Bonds Hydrogen Bonds 0.34 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CWN | 7CWN_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CWN A-O K378 G56 Hydrogen Bonds 3.75 View
7CWN A-O Y380 G56 Hydrogen Bonds 2.96 View
7CWN_africa_mut A-O Y369 L62 Hydrophobic 4.33 View
7CWN_africa_mut A-O Y369 L62 Hydrophobic 4.37 View
7CWN_africa_mut A-O K378 D52 Attractive 5.12 View
7CWN_africa_mut A-O K378 D52 Attractive, Hydrogen Bonds 3.17 View
7CWN_africa_mut A-O C379 G57 Hydrogen Bonds 3.64 View
7CWN_africa_mut A-O S383 A68 Hydrogen Bonds 3.75 View
7CWN_africa_mut A-O D405 D102 Repulsive 4.31 View
7CWN_africa_mut A-O D405 D102 Repulsive 3.94 View
7CWN_africa_mut A-O D405 D102 Repulsive 5.39 View
7CWN_africa_mut A-O R408 N31 Hydrogen Bonds 3.45 View
7CWN_africa_mut A-O R408 Y101 Hydrophobic 4.14 View
7CWN_africa_mut A-O R408 Y101 Hydrophobic 2.95 View
7CWN_africa_mut A-O R408 Y101 Hydrophobic 3.09 View
7CWN_africa_mut A-O R408 D102 Attractive, Hydrogen Bonds 4.50 View
7CWN_africa_mut A-O R408 D102 Attractive 4.59 View
7CWN_africa_mut A-O R408 D102 Attractive, Hydrogen Bonds 3.70 View
7CWN_africa_mut A-O R408 D102 Attractive 4.95 View
7CWN_africa_mut A-O R408 D102 Attractive 5.90 View
7CWN_africa_mut A-O P412 N55 Hydrophobic 4.47 View
7CWN_africa_mut A-O V503 Y104 Hydrophobic 4.01 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph