VTR

5 main matches found (32 matches in total )

Execution time: 17.0 seconds

Match RMSD = 0.75

VTR = 0.05

Average AVD = 0.63 Å

Parameters

Chains(7CWM.pdb ): C versus I

Chains(7CWM_africa_mut.pdb ) C versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CWM 3883 27 12 5 0 0 1 45
B7CWM_africa_mut 3874 35 0 8 0 0 1 44

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-I C-I F456 M103 F456 M103 Hydrophobic Hydrophobic 0.4 View
C-I C-I F490 Y32 F490 Y32 Hydrophobic Hydrophobic 0.56 View
C-I C-I F490 M103 F490 M103 Hydrophobic Hydrophobic 0.36 View
C-I C-I F490 Y32 F490 Y32 Hydrophobic Hydrophobic 0.37 View
C-I C-I V483 V50 V483 V50 Hydrophobic Hydrophobic 0.6 View
C-I C-I Y489 L102 Y489 L102 Hydrophobic Hydrophobic 1.47 View
C-I C-I E484 T101 K484 T101 Hydrophobic Hydrophobic 0.7 View
C-I C-I F490 M103 F490 M103 Hydrophobic Hydrophobic 0.33 View
C-I C-I N481 N57 N481 N57 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-I C-I F490 Y32 F490 Y32 Hydrophobic Hydrophobic 0.46 View
C-I C-I Y489 L102 Y489 L102 Hydrophobic Hydrophobic 1.81 View
C-I C-I Y489 L102 Y489 L102 Hydrophobic Hydrophobic 1.24 View
C-I C-I Y489 M103 Y489 M103 Hydrophobic Hydrophobic 0.69 View
C-I C-I V483 V50 V483 V50 Hydrophobic Hydrophobic 0.5 View
C-I C-I V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.67 View
C-I C-I F490 Y32 F490 Y32 Hydrophobic Hydrophobic 0.47 View
C-I C-I Y489 M103 Y489 M103 Hydrophobic Hydrophobic 0.45 View
C-I C-I T470 D54 T470 D54 Hydrophobic Hydrophobic 0.69 View
C-I C-I E484 T101 K484 T101 Hydrophobic Hydrophobic 1.92 View
C-I C-I Y489 M103 Y489 M103 Hydrophobic Hydrophobic 0.33 View
C-I C-I V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.62 View
C-I C-I F490 Y32 F490 Y32 Hydrophobic Hydrophobic 0.44 View
C-I C-I F490 Y32 F490 Y32 Hydrophobic Hydrophobic 0.54 View
C-I C-I L455 M103 L455 M103 Hydrophobic Hydrophobic 0.46 View
C-I C-I V483 V50 V483 V50 Hydrophobic Hydrophobic 0.43 View
C-I C-I Y489 M103 Y489 M103 Hydrophobic Hydrophobic 0.42 View
C-I C-I T470 S31 T470 S31 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-I C-I F490 Y32 F490 Y32 Aromatic Stacking Aromatic Stacking 0.48 View
C-I C-I L492 N104 L492 N104 Hydrogen Bonds Hydrogen Bonds 0.72 View
C-I C-I T470 S31 T470 S31 Hydrogen Bonds Hydrogen Bonds 0.57 View
C-I C-I E471 D54 E471 D54 Hydrophobic Hydrophobic 0.39 View
C-I C-I L455 M103 L455 M103 Hydrophobic Hydrophobic 0.28 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CWM | 7CWM_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CWM C-I E484 H35 Attractive 5.93 View
7CWM C-I E484 H35 Attractive 4.27 View
7CWM C-I E484 H35 Attractive 4.53 View
7CWM C-I E484 H35 Attractive, Hydrogen Bonds 3.52 View
7CWM C-I E484 R98 Attractive 5.17 View
7CWM C-I E484 R98 Attractive 5.50 View
7CWM C-I E484 R98 Attractive 4.09 View
7CWM C-I E484 R98 Attractive 5.42 View
7CWM C-I E484 R98 Attractive 5.97 View
7CWM C-I E484 R98 Attractive 4.51 View
7CWM C-I E484 H99 Attractive 4.02 View
7CWM C-I E484 H99 Attractive 5.79 View
7CWM_africa_mut C-I T470 D54 Hydrogen Bonds 3.81 View
7CWM_africa_mut C-I E471 D54 Hydrogen Bonds 3.78 View
7CWM_africa_mut C-I C480 Y59 Hydrogen Bonds 3.88 View
7CWM_africa_mut C-I V483 Y59 Hydrophobic 4.22 View
7CWM_africa_mut C-I V483 Y59 Hydrophobic 3.99 View
7CWM_africa_mut C-I K484 T101 Hydrophobic 3.00 View
7CWM_africa_mut C-I K484 T101 Hydrogen Bonds 2.68 View
7CWM_africa_mut C-I Y489 L102 Hydrophobic 4.38 View
7CWM_africa_mut C-I Y489 L102 Hydrophobic 4.30 View
7CWM_africa_mut C-I Y489 L102 Hydrophobic 4.37 View
7CWM_africa_mut C-I Y489 M103 Hydrophobic 3.84 View
7CWM_africa_mut C-I F490 Y32 Hydrophobic 4.45 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph