VTR

27 main matches found (52 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.46

VTR = 0.01

Average AVD = 0.41 Å

Parameters

Chains(7CJF.pdb ): C versus A

Chains(7CJF_africa_mut.pdb ) C versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CJF 627 27 3 23 0 4 1 58
B7CJF_africa_mut 627 30 1 25 0 4 1 61

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-C A-C S31 Y473 S31 Y473 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-C A-C L102 L455 L102 L455 Hydrophobic Hydrophobic 0.56 View
A-C A-C L102 F456 L102 F456 Hydrophobic Hydrophobic 0.37 View
A-C A-C R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.14 View
A-C A-C I28 A475 I28 A475 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-C A-C R71 K458 R71 K458 Repulsive Repulsive 0.33 View
A-C A-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.27 View
A-C A-C E101 R403 E101 R403 Attractive Attractive 0.34 View
A-C A-C R71 K458 R71 K458 Repulsive Repulsive 0.37 View
A-C A-C S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-C A-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.24 View
A-C A-C S53 K458 S53 K458 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-C A-C G54 K458 G54 K458 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-C A-C Y52 K417 Y52 N417 Hydrophobic Hydrophobic 0.85 View
A-C A-C R71 K458 R71 K458 Repulsive Repulsive 0.31 View
A-C A-C Y107 F486 Y107 F486 Aromatic Stacking Aromatic Stacking 0.28 View
A-C A-C L102 Y489 L102 Y489 Hydrophobic Hydrophobic 0.37 View
A-C A-C Y107 F486 Y107 F486 Hydrophobic Hydrophobic 0.24 View
A-C A-C L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.47 View
A-C A-C S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-C A-C Y107 F486 Y107 F486 Hydrophobic Hydrophobic 0.39 View
A-C A-C F27 F486 F27 F486 Hydrophobic Hydrophobic 0.42 View
A-C A-C S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-C A-C Q100 L455 Q100 L455 Hydrophobic Hydrophobic 0.21 View
A-C A-C E101 Y453 E101 Y453 Hydrogen Bonds Hydrogen Bonds 0.43 View
A-C A-C S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-C A-C Y52 K417 Y52 N417 Hydrophobic Hydrophobic 1.55 View
A-C A-C L102 L455 L102 L455 Hydrophobic Hydrophobic 0.57 View
A-C A-C L102 Y489 L102 Y489 Hydrophobic Hydrophobic 0.41 View
A-C A-C N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-C A-C Y107 F486 Y107 F486 Hydrophobic Hydrophobic 0.26 View
A-C A-C Q100 L455 Q100 L455 Hydrophobic Hydrophobic 0.2 View
A-C A-C Y107 F486 Y107 F486 Hydrophobic Hydrophobic 0.41 View
A-C A-C R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-C A-C L99 F456 L99 F456 Hydrophobic Hydrophobic 0.54 View
A-C A-C G26 S477 G26 S477 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-C A-C F27 F486 F27 F486 Hydrophobic Hydrophobic 0.4 View
A-C A-C S30 K458 S30 K458 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-C A-C L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.48 View
A-C A-C R71 K458 R71 K458 Repulsive Repulsive 0.36 View
A-C A-C G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-C A-C S53 Y473 S53 Y473 Hydrogen Bonds Hydrogen Bonds 0.37 View
A-C A-C Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.74 View
A-C A-C Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-C A-C E101 Q493 E101 Q493 Hydrophobic Hydrophobic 0.3 View
A-C A-C G54 N460 G54 N460 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-C A-C Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.2 View
A-C A-C E101 Y453 E101 Y453 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-C A-C S53 R457 S53 R457 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-C A-C R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-C A-C L102 Y489 L102 Y489 Hydrophobic Hydrophobic 0.45 View
A-C A-C L102 F456 L102 F456 Hydrophobic Hydrophobic 0.36 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CJF | 7CJF_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CJF A-C Y33 K417 Hydrophobic 4.29 View
7CJF A-C Y33 K417 Hydrophobic 4.26 View
7CJF A-C Q100 K417 Hydrogen Bonds 2.74 View
7CJF A-C E101 K417 Attractive 4.08 View
7CJF A-C E101 K417 Attractive, Hydrogen Bonds 3.13 View
7CJF_africa_mut A-C F27 F486 Hydrophobic 4.22 View
7CJF_africa_mut A-C S30 K458 Hydrogen Bonds 3.81 View
7CJF_africa_mut A-C S31 Y473 Hydrogen Bonds 3.80 View
7CJF_africa_mut A-C Y33 N417 Hydrogen Bonds 2.60 View
7CJF_africa_mut A-C Y33 F456 Hydrophobic 4.20 View
7CJF_africa_mut A-C Y52 Y421 Hydrophobic 4.33 View
7CJF_africa_mut A-C S53 K458 Hydrogen Bonds 3.52 View
7CJF_africa_mut A-C L102 L455 Hydrophobic 4.27 View
7CJF_africa_mut A-C L102 Y489 Hydrophobic 4.41 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph