VTR

11 main matches found (22 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.87

VTR = 0.06

Average AVD = 0.73 Å

Parameters

Chains(7CHE.pdb ): R versus A

Chains(7CHE_africa_mut.pdb ) R versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CHE 1047 11 10 13 0 1 0 35
B7CHE_africa_mut 1047 16 0 9 0 4 0 29

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
R-A R-A E484 R102 K484 R102 Attractive Repulsive 1.63 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.61 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.48 View
R-A R-A F490 T31 F490 T31 Hydrophobic Hydrophobic 0.54 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.3 View
R-A R-A E484 R100 K484 R100 Hydrogen Bonds Hydrogen Bonds 0.57 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.4 View
R-A R-A E484 R102 K484 R102 Attractive Hydrogen Bonds Repulsive 1.58 View
R-A R-A E484 R100 K484 R100 Hydrogen Bonds Hydrogen Bonds 0.6 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.5 View
R-A R-A F490 T31 F490 T31 Hydrophobic Hydrophobic 0.64 View
R-A R-A E484 R102 K484 R102 Attractive Hydrogen Bonds Repulsive 1.72 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.3 View
R-A R-A G482 D106 G482 D106 Hydrogen Bonds Hydrogen Bonds 0.61 View
R-A R-A N450 N77 N450 N77 Hydrogen Bonds Hydrogen Bonds 0.57 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.34 View
R-A R-A G482 L104 G482 L104 Hydrogen Bonds Hydrogen Bonds 0.59 View
R-A R-A E484 R102 K484 R102 Hydrogen Bonds Repulsive 1.82 View
R-A R-A N450 N77 N450 N77 Hydrogen Bonds Hydrogen Bonds 0.49 View
R-A R-A L452 T31 L452 T31 Hydrophobic Hydrophobic 0.65 View
R-A R-A N450 N74 N450 N74 Hydrogen Bonds Hydrogen Bonds 0.52 View
R-A R-A L452 T31 L452 T31 Hydrophobic Hydrophobic 0.71 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CHE | 7CHE_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CHE R-A E484 R100 Attractive 5.87 View
7CHE R-A E484 R100 Attractive 5.71 View
7CHE R-A E484 R100 Attractive 5.13 View
7CHE R-A E484 R102 Hydrogen Bonds 2.86 View
7CHE R-A E484 R102 Attractive, Hydrogen Bonds 2.81 View
7CHE R-A E484 R102 Attractive 3.21 View
7CHE R-A E484 R102 Attractive 4.48 View
7CHE R-A E484 R102 Attractive, Hydrogen Bonds 2.81 View
7CHE R-A E484 D106 Repulsive 4.50 View
7CHE_africa_mut R-A Y449 G26 Hydrogen Bonds 3.19 View
7CHE_africa_mut R-A N450 S75 Hydrogen Bonds 3.66 View
7CHE_africa_mut R-A L452 A28 Hydrophobic 4.17 View
7CHE_africa_mut R-A F490 T31 Hydrophobic 4.36 View
7CHE_africa_mut R-A F490 R102 Hydrophobic 4.43 View
7CHE_africa_mut R-A F490 R102 Hydrophobic 4.35 View
7CHE_africa_mut R-A F490 R102 Hydrophobic 4.48 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph