VTR

24 main matches found (44 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.52

VTR = 0.01

Average AVD = 0.47 Å

Parameters

Chains(7CH4.pdb ): R versus H

Chains(7CH4_africa_mut.pdb ) R versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CH4 619 21 1 24 0 0 0 46
B7CH4_africa_mut 619 22 0 26 0 0 0 48

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-R H-R G26 S477 G26 S477 Hydrogen Bonds Hydrogen Bonds 0.53 View
H-R H-R Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.21 View
H-R H-R V2 F486 V2 F486 Hydrophobic Hydrophobic 0.46 View
H-R H-R V106 F486 V106 F486 Hydrophobic Hydrophobic 0.37 View
H-R H-R S31 A475 S31 A475 Hydrogen Bonds Hydrogen Bonds 0.75 View
H-R H-R S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.28 View
H-R H-R L99 F456 L99 F456 Hydrophobic Hydrophobic 0.44 View
H-R H-R I28 A475 I28 A475 Hydrogen Bonds Hydrogen Bonds 0.62 View
H-R H-R R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.32 View
H-R H-R L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.44 View
H-R H-R S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.21 View
H-R H-R V106 F486 V106 F486 Hydrophobic Hydrophobic 0.28 View
H-R H-R S53 S459 S53 S459 Hydrogen Bonds Hydrogen Bonds 0.83 View
H-R H-R S31 Y473 S31 Y473 Hydrogen Bonds Hydrogen Bonds 0.58 View
H-R H-R Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.19 View
H-R H-R S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-R H-R P101 L455 P101 L455 Hydrophobic Hydrophobic 0.45 View
H-R H-R Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.25 View
H-R H-R Y102 Q493 Y102 Q493 Hydrogen Bonds Hydrogen Bonds 0.39 View
H-R H-R S31 Q474 S31 Q474 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-R H-R G54 N460 G54 N460 Hydrogen Bonds Hydrogen Bonds 0.31 View
H-R H-R L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.42 View
H-R H-R S53 R457 S53 R457 Hydrogen Bonds Hydrogen Bonds 0.32 View
H-R H-R Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.85 View
H-R H-R N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.73 View
H-R H-R G26 N487 G26 N487 Hydrogen Bonds Hydrogen Bonds 0.32 View
H-R H-R Y52 K417 Y52 N417 Hydrophobic Hydrophobic 1.26 View
H-R H-R G26 S477 G26 S477 Hydrogen Bonds Hydrogen Bonds 0.22 View
H-R H-R R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.25 View
H-R H-R Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.31 View
H-R H-R G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.53 View
H-R H-R P101 Q493 P101 Q493 Hydrophobic Hydrophobic 0.33 View
H-R H-R Y102 Q493 Y102 Q493 Hydrogen Bonds Hydrogen Bonds 0.43 View
H-R H-R L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.54 View
H-R H-R L99 F456 L99 F456 Hydrophobic Hydrophobic 0.45 View
H-R H-R V2 F486 V2 F486 Hydrophobic Hydrophobic 0.48 View
H-R H-R Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.91 View
H-R H-R R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.25 View
H-R H-R V2 F486 V2 F486 Hydrophobic Hydrophobic 0.45 View
H-R H-R S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 1.0 View
H-R H-R S53 Y473 S53 Y473 Hydrogen Bonds Hydrogen Bonds 0.35 View
H-R H-R S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.43 View
H-R H-R L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.71 View
H-R H-R V2 F486 V2 F486 Hydrophobic Hydrophobic 0.38 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CH4 | 7CH4_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CH4 H-R Y33 K417 Hydrophobic 4.47 View
7CH4 H-R D98 K417 Attractive 5.16 View
7CH4_africa_mut H-R S31 Y473 Hydrogen Bonds 3.72 View
7CH4_africa_mut H-R Y33 N417 Hydrogen Bonds 2.71 View
7CH4_africa_mut H-R Y33 F456 Hydrophobic 4.41 View
7CH4_africa_mut H-R Y33 F456 Hydrophobic 4.21 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph