VTR

15 main matches found (54 matches in total )

Execution time: 12.0 seconds

Match RMSD = 0.45

VTR = 0.01

Average AVD = 0.39 Å

Parameters

Chains(7CDJ.pdb ): E versus H

Chains(7CDJ_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CDJ 619 40 0 14 0 0 3 57
B7CDJ_africa_mut 619 40 0 13 0 2 3 58

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.22 View
E-H E-H E484 Y33 K484 Y33 Hydrogen Bonds Hydrogen Bonds 1.42 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.33 View
E-H E-H Q498 D73 Q498 D73 Hydrogen Bonds Hydrogen Bonds 0.49 View
E-H E-H Y489 H102 Y489 H102 Aromatic Stacking Aromatic Stacking 0.26 View
E-H E-H S494 S54 S494 S54 Hydrogen Bonds Hydrogen Bonds 0.29 View
E-H E-H Y489 F100 Y489 F100 Hydrophobic Hydrophobic 0.45 View
E-H E-H L492 S56 L492 S56 Hydrogen Bonds Hydrogen Bonds 0.44 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.28 View
E-H E-H Q493 S53 Q493 S53 Hydrogen Bonds Hydrogen Bonds 0.47 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.27 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.2 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.21 View
E-H E-H Y449 R72 Y449 R72 Hydrogen Bonds Hydrogen Bonds 0.41 View
E-H E-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.54 View
E-H E-H F486 F100 F486 F100 Aromatic Stacking Aromatic Stacking 0.15 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.29 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.24 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.19 View
E-H E-H Y449 D73 Y449 D73 Hydrogen Bonds Hydrogen Bonds 0.38 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.69 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.18 View
E-H E-H Q498 D73 Q498 D73 Hydrogen Bonds Hydrogen Bonds 0.18 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.22 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.27 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.68 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.15 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.28 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.68 View
E-H E-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.55 View
E-H E-H F490 T57 F490 T57 Hydrophobic Hydrophobic 0.52 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.22 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.65 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.65 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.33 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.65 View
E-H E-H Y489 F100 Y489 F100 Hydrophobic Hydrophobic 0.41 View
E-H E-H Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.64 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.25 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.25 View
E-H E-H Y489 F100 Y489 F100 Hydrophobic Hydrophobic 0.43 View
E-H E-H S494 S54 S494 S54 Hydrogen Bonds Hydrogen Bonds 0.37 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.32 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.27 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.29 View
E-H E-H Y489 H102 Y489 H102 Hydrogen Bonds Hydrogen Bonds 1.01 View
E-H E-H Y449 N74 Y449 N74 Hydrogen Bonds Hydrogen Bonds 0.48 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.25 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.28 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.21 View
E-H E-H Q493 H102 Q493 H102 Hydrogen Bonds Hydrogen Bonds 0.4 View
E-H E-H F486 L105 F486 L105 Hydrophobic Hydrophobic 0.24 View
E-H E-H F486 F100 F486 F100 Hydrophobic Hydrophobic 0.18 View
E-H E-H F456 H102 F456 H102 Aromatic Stacking Aromatic Stacking 0.21 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CDJ | 7CDJ_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CDJ E-H E484 Y50 Hydrogen Bonds 2.81 View
7CDJ E-H E484 T57 Hydrogen Bonds 3.83 View
7CDJ E-H F490 T57 Hydrophobic 4.45 View
7CDJ_africa_mut E-H K484 Y33 Hydrophobic 4.39 View
7CDJ_africa_mut E-H K484 H102 Repulsive 5.16 View
7CDJ_africa_mut E-H K484 H102 Repulsive 5.49 View
7CDJ_africa_mut E-H Q498 A75 Hydrogen Bonds 3.76 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph