VTR

3 main matches found (3 matches in total )

Execution time: 25.0 seconds

Match RMSD = 0.37

VTR = 0.02

Average AVD = 0.36 Å

Parameters

Chains(7CAK.pdb ): C versus H

Chains(7CAK_africa_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAK 3771 0 0 3 0 0 0 3
B7CAK_africa_mut 3762 1 0 4 0 0 0 5

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H Y508 N91 Y508 N91 Hydrogen Bonds Hydrogen Bonds 0.5 View
C-H C-H S375 W93 S375 W93 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-H C-H S375 F92 S375 F92 Hydrogen Bonds Hydrogen Bonds 0.25 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAK | 7CAK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAK_africa_mut C-H N437 F92 Hydrophobic 4.41 View
7CAK_africa_mut C-H Y501 I28 Hydrogen Bonds 3.52 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph