VTR

11 main matches found (15 matches in total )

Execution time: 85.0 seconds

Match RMSD = 0.32

VTR = 0.02

Average AVD = 0.3 Å

Parameters

Chains(7CAK.pdb ): A versus D

Chains(7CAK_africa_mut.pdb ) A versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAK 3771 4 0 10 0 0 1 15
B7CAK_africa_mut 3762 10 0 12 0 0 1 23

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-D A-D F374 W93 F374 W93 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-D A-D F374 F92 F374 F92 Hydrogen Bonds Hydrogen Bonds 0.21 View
A-D A-D F377 W93 F377 W93 Hydrophobic Hydrophobic 0.16 View
A-D A-D V503 N31 V503 N31 Hydrophobic Hydrophobic 0.42 View
A-D A-D S375 F92 S375 F92 Hydrogen Bonds Hydrogen Bonds 0.2 View
A-D A-D S375 Y95 S375 Y95 Hydrogen Bonds Hydrogen Bonds 0.48 View
A-D A-D F377 W93 F377 W93 Aromatic Stacking Aromatic Stacking 0.23 View
A-D A-D F374 F92 F374 F92 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-D A-D S375 F92 S375 F92 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-D A-D S375 W93 S375 W93 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-D A-D F377 W93 F377 W93 Hydrophobic Hydrophobic 0.25 View
A-D A-D S375 N91 S375 N91 Hydrogen Bonds Hydrogen Bonds 0.18 View
A-D A-D V503 N31 V503 N31 Hydrophobic Hydrophobic 0.41 View
A-D A-D S375 N91 S375 N91 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-D A-D S373 F92 S373 F92 Hydrogen Bonds Hydrogen Bonds 0.18 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAK | 7CAK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAK_africa_mut A-D A372 F92 Hydrophobic 4.09 View
7CAK_africa_mut A-D A372 F92 Hydrophobic 4.17 View
7CAK_africa_mut A-D Y501 S30 Hydrogen Bonds 3.77 View
7CAK_africa_mut A-D Y501 S30 Hydrogen Bonds 2.97 View
7CAK_africa_mut A-D V503 Y49 Hydrophobic 4.44 View
7CAK_africa_mut A-D V503 Y49 Hydrophobic 3.78 View
7CAK_africa_mut A-D V503 Y49 Hydrophobic 3.75 View
7CAK_africa_mut A-D V503 Y49 Hydrophobic 2.94 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph