VTR

20 main matches found (38 matches in total )

Execution time: 33.0 seconds

Match RMSD = 0.41

VTR = 0.02

Average AVD = 0.39 Å

Parameters

Chains(7CAI.pdb ): B versus G

Chains(7CAI_africa_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAI 3911 18 7 11 0 3 0 39
B7CAI_africa_mut 3902 24 9 14 0 3 0 50

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G R408 D102 R408 D102 Attractive Attractive 0.27 View
B-G B-G F377 Y50 F377 Y50 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-G B-G R408 D102 R408 D102 Attractive Attractive 0.47 View
B-G B-G R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.19 View
B-G B-G R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.36 View
B-G B-G D405 D102 D405 D102 Repulsive Repulsive 0.39 View
B-G B-G C379 T58 C379 T58 Hydrogen Bonds Hydrogen Bonds 0.3 View
B-G B-G R408 D102 R408 D102 Attractive Attractive 0.6 View
B-G B-G R408 D102 R408 D102 Attractive Attractive 0.4 View
B-G B-G R408 D102 R408 D102 Hydrophobic Hydrophobic 0.29 View
B-G B-G T376 P103 T376 P103 Hydrophobic Hydrophobic 0.44 View
B-G B-G R408 D102 R408 D102 Attractive Attractive 0.47 View
B-G B-G K378 Y50 K378 Y50 Hydrophobic Hydrophobic 0.36 View
B-G B-G Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.52 View
B-G B-G T385 L62 T385 L62 Hydrophobic Hydrophobic 0.3 View
B-G B-G T376 Y50 T376 Y50 Hydrogen Bonds Hydrogen Bonds 0.46 View
B-G B-G Y380 G57 Y380 G57 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-G B-G D405 D102 D405 D102 Repulsive Repulsive 0.19 View
B-G B-G Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.5 View
B-G B-G D405 Y104 D405 Y104 Hydrogen Bonds Hydrogen Bonds 0.73 View
B-G B-G Q414 Y101 Q414 Y101 Hydrophobic Hydrophobic 0.46 View
B-G B-G Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.19 View
B-G B-G Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.23 View
B-G B-G R408 D102 R408 D102 Attractive Attractive 0.2 View
B-G B-G Q414 Y101 Q414 Y101 Hydrogen Bonds Hydrogen Bonds 0.39 View
B-G B-G R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.33 View
B-G B-G T385 K65 T385 K65 Hydrophobic Hydrophobic 0.46 View
B-G B-G Y508 P103 Y508 P103 Hydrophobic Hydrophobic 0.58 View
B-G B-G D405 Y104 D405 Y104 Hydrogen Bonds Hydrogen Bonds 0.68 View
B-G B-G R408 D102 R408 D102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.4 View
B-G B-G T385 K65 T385 K65 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-G B-G K378 G57 K378 G57 Hydrogen Bonds Hydrogen Bonds 0.32 View
B-G B-G D405 D102 D405 D102 Repulsive Repulsive 0.24 View
B-G B-G Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.37 View
B-G B-G T376 Y105 T376 Y105 Hydrogen Bonds Hydrogen Bonds 0.44 View
B-G B-G T385 K65 T385 K65 Hydrophobic Hydrophobic 0.46 View
B-G B-G Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.37 View
B-G B-G P384 D60 P384 D60 Hydrophobic Hydrophobic 0.29 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAI | 7CAI_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAI_africa_mut B-G Y369 L62 Hydrophobic 4.34 View
7CAI_africa_mut B-G Y369 L62 Hydrophobic 4.14 View
7CAI_africa_mut B-G Y369 L62 Hydrophobic 4.26 View
7CAI_africa_mut B-G K378 D52 Attractive 5.59 View
7CAI_africa_mut B-G K378 D52 Attractive, Hydrogen Bonds 4.21 View
7CAI_africa_mut B-G R408 Y101 Hydrophobic 4.26 View
7CAI_africa_mut B-G R408 Y101 Hydrophobic 4.47 View
7CAI_africa_mut B-G P412 N55 Hydrogen Bonds 3.79 View
7CAI_africa_mut B-G V503 Y104 Hydrophobic 4.47 View
7CAI_africa_mut B-G G504 Y104 Hydrogen Bonds 3.58 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph