VTR

14 main matches found (24 matches in total )

Execution time: 5.0 seconds

Match RMSD = 0.58

VTR = 0.03

Average AVD = 0.54 Å

Parameters

Chains(7CAH.pdb ): A versus E

Chains(7CAH_africa_mut.pdb ) A versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAH 404 10 4 11 0 0 0 25
B7CAH_africa_mut 404 20 4 11 0 0 0 35

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-A E-A P103 V407 P103 V407 Hydrophobic Hydrophobic 0.72 View
E-A E-A Y105 T376 Y105 T376 Hydrogen Bonds Hydrogen Bonds 0.51 View
E-A E-A L62 P384 L62 P384 Hydrophobic Hydrophobic 0.66 View
E-A E-A Y33 K378 Y33 K378 Hydrogen Bonds Hydrogen Bonds 0.67 View
E-A E-A D102 R408 D102 R408 Attractive Attractive 0.32 View
E-A E-A T58 C379 T58 C379 Hydrogen Bonds Hydrogen Bonds 0.22 View
E-A E-A K65 T385 K65 T385 Hydrophobic Hydrophobic 0.46 View
E-A E-A T58 C379 T58 C379 Hydrogen Bonds Hydrogen Bonds 0.21 View
E-A E-A N55 Y380 N55 Y380 Hydrophobic Hydrophobic 0.54 View
E-A E-A N55 P412 N55 P412 Hydrophobic Hydrophobic 0.49 View
E-A E-A D102 K378 D102 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.47 View
E-A E-A Y104 D405 Y104 D405 Hydrogen Bonds Hydrogen Bonds 0.96 View
E-A E-A Y104 D405 Y104 D405 Hydrogen Bonds Hydrogen Bonds 0.57 View
E-A E-A N55 Y380 N55 Y380 Hydrophobic Hydrophobic 0.53 View
E-A E-A K65 T385 K65 T385 Hydrophobic Hydrophobic 0.39 View
E-A E-A F54 P412 F54 P412 Hydrophobic Hydrophobic 1.05 View
E-A E-A Y104 G504 Y104 G504 Hydrogen Bonds Hydrogen Bonds 0.62 View
E-A E-A D102 R408 D102 R408 Hydrogen Bonds Hydrogen Bonds 0.34 View
E-A E-A Y50 K378 Y50 K378 Hydrogen Bonds Hydrogen Bonds 0.51 View
E-A E-A D102 K378 D102 K378 Attractive Attractive 0.47 View
E-A E-A Y104 V503 Y104 V503 Hydrophobic Hydrophobic 0.93 View
E-A E-A S59 F377 S59 F377 Hydrogen Bonds Hydrogen Bonds 0.51 View
E-A E-A D102 R408 D102 R408 Hydrophobic Hydrophobic 0.29 View
E-A E-A E100 R408 E100 R408 Attractive Attractive 0.52 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAH | 7CAH_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAH_africa_mut E-A F54 P412 Hydrophobic 4.28 View
7CAH_africa_mut E-A F54 P412 Hydrophobic 4.42 View
7CAH_africa_mut E-A L62 Y369 Hydrophobic 4.09 View
7CAH_africa_mut E-A L62 Y369 Hydrophobic 4.47 View
7CAH_africa_mut E-A L62 Y369 Hydrophobic 4.47 View
7CAH_africa_mut E-A L62 Y369 Hydrophobic 3.96 View
7CAH_africa_mut E-A L62 Y369 Hydrophobic 4.33 View
7CAH_africa_mut E-A Y101 R408 Hydrophobic 3.96 View
7CAH_africa_mut E-A Y101 R408 Hydrophobic 4.38 View
7CAH_africa_mut E-A D102 V407 Hydrophobic 4.27 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph