VTR

22 main matches found (45 matches in total )

Execution time: 49.0 seconds

Match RMSD = 0.63

VTR = 0.03

Average AVD = 0.58 Å

Parameters

Chains(7CAC.pdb ): B versus E

Chains(7CAC_africa_mut.pdb ) B versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAC 3499 23 3 15 0 4 0 45
B7CAC_africa_mut 3490 31 6 16 0 5 0 58

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-E B-E R408 D102 R408 D102 Hydrophobic Hydrophobic 0.65 View
B-E B-E V503 Y104 V503 Y104 Hydrophobic Hydrophobic 1.17 View
B-E B-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.3 View
B-E B-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.44 View
B-E B-E Q414 Y101 Q414 Y101 Hydrogen Bonds Hydrogen Bonds 1.1 View
B-E B-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.39 View
B-E B-E R408 D102 R408 D102 Attractive Attractive 0.66 View
B-E B-E T376 Y105 T376 Y105 Hydrogen Bonds Hydrogen Bonds 0.23 View
B-E B-E T385 K65 T385 K65 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-E B-E D405 D102 D405 D102 Repulsive Repulsive 0.72 View
B-E B-E D405 D102 D405 D102 Repulsive Repulsive 0.9 View
B-E B-E D405 Y104 D405 Y104 Hydrogen Bonds Hydrogen Bonds 0.6 View
B-E B-E T385 L62 T385 L62 Hydrophobic Hydrophobic 0.38 View
B-E B-E Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.26 View
B-E B-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.54 View
B-E B-E V503 Y104 V503 Y104 Hydrophobic Hydrophobic 0.79 View
B-E B-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.3 View
B-E B-E K386 K65 K386 K65 Repulsive Repulsive 0.6 View
B-E B-E Q414 N55 Q414 N55 Hydrogen Bonds Hydrogen Bonds 0.42 View
B-E B-E R408 Y101 R408 Y101 Hydrogen Bonds Hydrogen Bonds 1.04 View
B-E B-E T376 Y50 T376 Y50 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-E B-E R408 D102 R408 D102 Attractive Attractive 0.71 View
B-E B-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.4 View
B-E B-E Y508 P103 Y508 P103 Hydrophobic Hydrophobic 0.78 View
B-E B-E Y380 G57 Y380 G57 Hydrogen Bonds Hydrogen Bonds 0.23 View
B-E B-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.64 View
B-E B-E K378 G57 K378 G57 Hydrogen Bonds Hydrogen Bonds 0.42 View
B-E B-E V503 Y104 V503 Y104 Hydrophobic Hydrophobic 0.79 View
B-E B-E D405 D102 D405 D102 Hydrogen Bonds Hydrogen Bonds 0.69 View
B-E B-E G504 Y104 G504 Y104 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-E B-E R408 D102 R408 D102 Attractive Attractive 0.76 View
B-E B-E Y508 P103 Y508 P103 Hydrophobic Hydrophobic 0.69 View
B-E B-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.44 View
B-E B-E C379 T58 C379 T58 Hydrogen Bonds Hydrogen Bonds 0.12 View
B-E B-E Q414 Y101 Q414 Y101 Hydrogen Bonds Hydrogen Bonds 1.03 View
B-E B-E T385 D60 T385 D60 Hydrophobic Hydrophobic 0.35 View
B-E B-E P384 D60 P384 D60 Hydrophobic Hydrophobic 0.23 View
B-E B-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.81 View
B-E B-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.45 View
B-E B-E P412 N55 P412 N55 Hydrogen Bonds Hydrogen Bonds 0.35 View
B-E B-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.45 View
B-E B-E R408 D102 R408 D102 Hydrogen Bonds Hydrogen Bonds 0.71 View
B-E B-E Y508 P103 Y508 P103 Hydrophobic Hydrophobic 0.81 View
B-E B-E R408 D102 R408 D102 Hydrophobic Hydrophobic 0.55 View
B-E B-E D405 D102 D405 D102 Repulsive Repulsive 0.85 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAC | 7CAC_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAC_africa_mut B-E Y369 L62 Hydrophobic 4.30 View
7CAC_africa_mut B-E Y369 L62 Hydrophobic 3.87 View
7CAC_africa_mut B-E F377 Y50 Hydrogen Bonds 3.58 View
7CAC_africa_mut B-E K378 D52 Attractive 5.67 View
7CAC_africa_mut B-E K378 D52 Attractive 4.96 View
7CAC_africa_mut B-E Y380 N55 Hydrophobic 4.41 View
7CAC_africa_mut B-E D405 D102 Repulsive 5.97 View
7CAC_africa_mut B-E V407 P103 Hydrophobic 4.24 View
7CAC_africa_mut B-E R408 Y101 Hydrophobic 4.24 View
7CAC_africa_mut B-E R408 Y101 Hydrophobic 4.43 View
7CAC_africa_mut B-E R408 D102 Attractive 5.99 View
7CAC_africa_mut B-E V503 Y104 Hydrophobic 4.30 View
7CAC_africa_mut B-E V503 Y104 Hydrophobic 3.59 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph